학술논문

Phenotypic and Genomic Analyses of Burkholderia stabilis Clinical Contamination, Switzerland.
Document Type
Journal Article
Source
Emerging Infectious Diseases. Jun2019, Vol. 25 Issue 6, p1084-1092. 9p.
Subject
*BURKHOLDERIA
*OPPORTUNISTIC infections
*DRUG resistance
*PSEUDOGENES
*CHROMOSOMES
*COMPARATIVE studies
*CROSS infection
*FATTY acids
*GENOMES
*RESEARCH methodology
*MEDICAL cooperation
*RESEARCH
*RESEARCH funding
*EVALUATION research
*BURKHOLDERIA infections
Language
ISSN
1080-6040
Abstract
A recent hospital outbreak related to premoistened gloves used to wash patients exposed the difficulties of defining Burkholderia species in clinical settings. The outbreak strain displayed key B. stabilis phenotypes, including the inability to grow at 42°C; we used whole-genome sequencing to confirm the pathogen was B. stabilis. The outbreak strain genome comprises 3 chromosomes and a plasmid, sharing an average nucleotide identity of 98.4% with B. stabilis ATCC27515 BAA-67, but with 13% novel coding sequences. The genome lacks identifiable virulence factors and has no apparent increase in encoded antimicrobial drug resistance, few insertion sequences, and few pseudogenes, suggesting this outbreak was an opportunistic infection by an environmental strain not adapted to human pathogenicity. The diversity among outbreak isolates (22 from patients and 16 from washing gloves) is only 6 single-nucleotide polymorphisms, although the genome remains plastic, with large elements stochastically lost from outbreak isolates. [ABSTRACT FROM AUTHOR]