학술논문

Passage relevance models for genomics search.
Document Type
Article
Source
BMC Bioinformatics. 2009 Supplement 3, Vol. 10, Special section p1-9. 9p. 2 Diagrams, 5 Charts.
Subject
*RELEVANCE ranking (Information science)
*GENOMICS
*MARKOV random fields
*PRECISION (Information retrieval)
*BIOLOGISTS
*BIOINFORMATICS
Language
ISSN
1471-2105
Abstract
We present a passage relevance model for integrating syntactic and semantic evidence of biomedical concepts and topics using a probabilistic graphical model. Component models of topics, concepts, terms, and document are represented as potential functions within a Markov Random Field. The probability of a passage being relevant to a biologist's information need is represented as the joint distribution across all potential functions. Relevance model feedback of top ranked passages is used to improve distributional estimates of query concepts and topics in context, and a dimensional indexing strategy is used for efficient aggregation of concept and term statistics. By integrating multiple sources of evidence including dependencies between topics, concepts, and terms, we seek to improve genomics literature passage retrieval precision. Using this model, we are able to demonstrate statistically significant improvements in retrieval precision using a large genomics literature corpus. [ABSTRACT FROM AUTHOR]