학술논문

Statistical Analysis of Microarray Data with Replicated Spots: A Case Study with Synechococcus WH8102.
Document Type
Article
Source
Comparative & Functional Genomics. 2009, Special section p1-11. 11p. 1 Color Photograph, 5 Charts, 12 Graphs.
Subject
*DNA microarrays
*GENES
*GENOMES
*STATISTICS
*GENE expression
Language
ISSN
1531-6912
Abstract
Until recently microarray experiments often involved relatively few arrays with only a single representation of each gene on each array. A complete genome microarray with multiple spots per gene (spread out spatially across the array) was developed in order to compare the gene expression of amarine cyanobacterium and a knockoutmutant strain in a defined artificial seawatermedium. Statistical methods were developed for analysis in the special situation of this case study where there is gene replication within an array and where relatively few arrays are used, which can be the case with current array technology. Due in part to the replication within an array, it was possible to detect very small changes in the levels of expression between the wild type and mutant strains. One interesting biological outcome of this experiment is the indication of the extent to which the phosphorus regulatory system of this cyanobacterium affects the expression of multiple genes beyond those strictly involved in phosphorus acquisition. [ABSTRACT FROM AUTHOR]