학술논문

Co-regulation proteomics reveals substrates and mechanisms of APC/C-dependent degradation.
Document Type
Article
Source
EMBO Journal. 2/18/2014, Vol. 33 Issue 4, p385-399. 15p. 1 Diagram, 6 Graphs.
Subject
*PROTEOMICS
*CELL cycle
*PROTEIN analysis
*SPINDLE apparatus
*PHOSPHORYLATION
*PROTEIN kinases
*CELLULAR control mechanisms
Language
ISSN
0261-4189
Abstract
Using multiplexed quantitative proteomics, we analyzed cell cycle-dependent changes of the human proteome. We identified >4,400 proteins, each with a six-point abundance profile across the cell cycle. Hypothesizing that proteins with similar abundance profiles are co-regulated, we clustered the proteins with abundance profiles most similar to known Anaphase-Promoting Complex/Cyclosome ( APC/C) substrates to identify additional putative APC/C substrates. This protein profile similarity screening ( PPSS) analysis resulted in a shortlist enriched in kinases and kinesins. Biochemical studies on the kinesins confirmed KIFC1, KIF18A, KIF2C, and KIF4A as APC/ C substrates. Furthermore, we showed that the APC/ CCDH1-dependent degradation of KIFC1 regulates the bipolar spindle formation and proper cell division. A targeted quantitative proteomics experiment showed that KIFC1 degradation is modulated by a stabilizing CDK1-dependent phosphorylation site within the degradation motif of KIFC1. The regulation of KIFC1 (de-)phosphorylation and degradation provides insights into the fidelity and proper ordering of substrate degradation by the APC/C during mitosis. [ABSTRACT FROM AUTHOR]