학술논문

Solution structure of a viral DNA repair polymerase.
Document Type
Article
Source
Nature Structural Biology. Nov2001, Vol. 8 Issue 11, p936. 6p. 3 Diagrams, 1 Chart, 1 Graph.
Subject
*DNA polymerases
*AFRICAN swine fever virus
*MOLECULAR dynamics
Language
ISSN
1072-8368
Abstract
DNA polymerase X (Pol X) from the African swine fever virus (ASFV) specifically binds intermediates in the single-nucleotide base-excision repair process, an activity indicative of repair function. In addition, Pol X catalyzes DNA polymerization with low nucleotide-insertion fidelity. The structural mechanisms by which DNA polymerases confer high or low fidelity in DNA polymerization remain to be elucidated. The three-dimensional structure of Pol X has been determined. Unlike other DNA polymerases, Pol X is formed from only a palm and a C-terminal subdomain. Pol X has a novel palm subdomain fold, containing a positively charged helix at the DNA binding surface. Purine deoxynucleoside triphosphate (dNTP) substrates bind between the palm and C-terminal subdomain, at a dNTP-binding helix, and induce a unique conformation in Pol X. The purine dNTP?bound conformation and high binding affinity for dGTP?Mg2+ of Pol X may contribute to its low fidelity. [ABSTRACT FROM AUTHOR]