학술논문
Ten simple rules for creating reusable pathway models for computational analysis and visualization.
Document Type
Editorial
Author
Hanspers, Kristina; Kutmon, Martina; Coort, Susan L.; Digles, Daniela; Dupuis, Lauren J.; Ehrhart, Friederike; Hu, Finterly; Lopes, Elisson N.; Martens, Marvin; Pham, Nhung; Shin, Woosub; Slenter, Denise N.; Waagmeester, Andra; Willighagen, Egon L.; Winckers, Laurent A.; Evelo, Chris T.; Pico, Alexander R.
Source
Subject
*SCIENTIFIC literature
*VISUALIZATION
*KREBS cycle
*SMALL molecules
*WORLD Wide Web
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Language
ISSN
1553-734X
Abstract
Many of the pathway curation tools have integrated identifier resolution, and curators only need to define the identifier and database for the entity. Rule 8: Consider data visualization when using colors in your pathway model Various types of data, like transcriptomics, proteomics, metabolomics, and fluxomics data, can be visualized on pathway models. Another reason to keep your pathway updated is the identifier annotation for genes, proteins, metabolites, and other pathway elements (see Rule 3). [Extracted from the article]