학술논문

Evaluation of non-coding variation in GLUT1 deficiency.
Document Type
Journal Article
Source
Developmental Medicine & Child Neurology. Dec2016, Vol. 58 Issue 12, p1295-1302. 8p.
Subject
*GLUCOSE transporter 1 deficiency syndrome
*BLOOD-brain barrier disorders
*DNA copy number variations
*GENETIC mutation
*CEREBROSPINAL fluid
*NON-coding RNA
*THERAPEUTICS
*CARRIER proteins
*EPILEPSY
*GENEALOGY
*GENETIC techniques
*GENOMES
*GLUCOSE
*INBORN errors of carbohydrate metabolism
*SEQUENCE analysis
Language
ISSN
0012-1622
Abstract
Aim: Loss-of-function mutations in SLC2A1, encoding glucose transporter-1 (GLUT-1), lead to dysfunction of glucose transport across the blood-brain barrier. Ten percent of cases with hypoglycorrhachia (fasting cerebrospinal fluid [CSF] glucose <2.2mmol/L) do not have mutations. We hypothesized that GLUT1 deficiency could be due to non-coding SLC2A1 variants.Method: We performed whole exome sequencing of one proband with a GLUT1 phenotype and hypoglycorrhachia negative for SLC2A1 sequencing and copy number variants. We studied a further 55 patients with different epilepsies and low CSF glucose who did not have exonic mutations or copy number variants. We sequenced non-coding promoter and intronic regions. We performed mRNA studies for the recurrent intronic variant.Results: The proband had a de novo splice site mutation five base pairs from the intron-exon boundary. Three of 55 patients had deep intronic SLC2A1 variants, including a recurrent variant in two. The recurrent variant produced less SLC2A1 mRNA transcript.Interpretation: Fasting CSF glucose levels show an age-dependent correlation, which makes the definition of hypoglycorrhachia challenging. Low CSF glucose levels may be associated with pathogenic SLC2A1 mutations including deep intronic SLC2A1 variants. Extending genetic screening to non-coding regions will enable diagnosis of more patients with GLUT1 deficiency, allowing implementation of the ketogenic diet to improve outcomes. [ABSTRACT FROM AUTHOR]