학술논문
The thermodynamics of guest complexation to octa-acid and tetra-endo-methyl octa-acid: reference data for the sixth statistical assessment of modeling of proteins and ligands (SAMPL6).
Document Type
Article
Author
Source
Subject
*DRUG design
*THERMODYNAMICS
*COMPLEXATION reactions
*METHYL groups
*PROTEIN-ligand interactions
*COMPUTER-aided design
*PHARMACEUTICAL industry
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Language
ISSN
1061-0278
Abstract
Although computer-aided drug design has greatly improved over time, its application in the pharmaceutical industry is still limited by the accuracy of association constant (Ka) predictions. Towards improving this situation, the Statistical Assessment of the Modeling of Proteins and Ligands (SAMPL) is a series of community-wide blind challenges aimed to advance computational techniques as standard predictive tools in rational drug design (https://en.wikipedia.org/wiki/SAMPL%5fChallenge). As an empirical contribution to SAMPL6, we report here the Ka and thermodynamic parameters (∆G, ∆H, - T∆S) of eight guests binding to two hosts (OA and TEMOA) using ITC. Both hosts contain a unique, well-defined binding pocket capable of storing guests with up to ten non-hydrogen atoms, whilst the selection of amphiphilic guests contain a range of saturated and unsaturated substituents. The thermodynamic data from this study will allow the challenge participants of SAMPL6 to test the accuracy of their computational protocols for calculating host-guest affinities. [ABSTRACT FROM AUTHOR]