학술논문

Genotyping apple (Malus x domestica Borkh.) heirloom germplasm collected and maintained by the Regional Administration of Friuli Venezia Giulia (Italy).
Document Type
Article
Source
Scientia Horticulturae. Jun2019, Vol. 252, p229-237. 9p.
Subject
*APPLES
*MICROSATELLITE repeats
*GERMPLASM
*HEIRLOOMS
Language
ISSN
0304-4238
Abstract
Highlights • 469 molecular profiles of apple accessions collected in Friuli Venezia Giulia, north-eastern Italy, and maintained in 3 different locations were analysed at 15 SSR markers. • 234 not redundant accessions were identified; of these 102 were synonyms. • Of the remaining 132 unique accessions, 54 were triploid (40.9%), a percentage never reported so high in the literature. • The genetic diversity was very high and comparable with that reported for larger collections analysed in the recent literature. • Microsatellite DNA (or SSR) remains an interesting marker; however the di-nucleotide core repeats, popular in apple genotyping, have some drawbacks that might make hard the attempts to align data sets produced by different laboratories. Abstract This paper reports the genetic diversity of apple germplasm collected in the Friuli Venezia Giulia region (north-eastern Italy). The collection, maintained in three different locations, was represented by local cultivars which probably originated as chance seedlings together with cultivars introduced from neighbouring countries, the name and origin of most of which has been lost over time. A preliminary procedure described in the paper started with 469 molecular profiles analysed using 15 Simple Sequence Repeat (SSR) markers and allowed identification of the 'true-to-type' genotypes among those maintained in multiple locations. The set of the remaining 234 accessions was further reduced to 132 unique profiles by removing 102 synonyms, that is accessions with different name and the same molecular profile. Flow cytometry identified as many as 54 triploids (40.9%), whose status was confirmed by field observations on leaf size and the occurrence of triallelic profiles at several SSR markers. The remaining 78 diploid accessions were analysed for their genetic diversity, that is the number of alleles, observed and expected heterozygosity, polymorphism information content (PIC), the frequency of null alleles and the probability of identity for unrelated and full-sib genotypes. The paper provides a critical evaluation of the SSR markers adopted for the study, discusses the genetic diversity observed in the apple germplasm collection examined as well as its high frequency of triploids compared with other apple collections described in the literature. [ABSTRACT FROM AUTHOR]