학술논문

IMA genome‑F17: Draft genome sequences of an Armillaria species from Zimbabwe, Ceratocystis colombiana, Elsinoë necatrix, Rosellinia necatrix, two genomes of Sclerotinia minor, short‑read genome assemblies and annotations of four Pyrenophora teres isolates from barley grass, and a long-read genome assembly of Cercospora zeina
Document Type
Article
Source
IMA Fungus. 11/21/2022, Vol. 13 Issue 1, p1-22. 22p.
Subject
*LEAF spots
*NUCLEOTIDE sequencing
*AVOCADO
*SPECIES
*GENOMES
*MOBILE genetic elements
*PYRENOPHORA
Language
ISSN
2210-6340
Abstract
QUAST (version: 5.0.2) was used to assess the quality of the genome assembly and to determine the general statistics of the genomes (including genome size, GC content, N50, L50, number of contigs, largest contig size, and the average number of mismatches per 100 kbp) (Mikheenko et al. [98]). IMA genome-F17: Draft genome sequences of an Armillaria species from Zimbabwe, Ceratocystis colombiana, Elsinoë necatrix, Rosellinia necatrix, two genomes of Sclerotinia minor, short-read genome assemblies and annotations of four Pyrenophora teres isolates from barley grass, and a long-read genome assembly of Cercospora zeina To confirm the identity of the two I S. minor i draft genomes presented in this announcement, the partial small subunit ribosomal RNA gene, complete internal transcribed spacer 1 and 5.8S ribosomal RNA gene, and partial internal transcribed spacer 2 (ITS region) were extracted from the two assembled genomes (CBS 339.39 and SsChi) as well as from the LC41 reference genome (Yang et al. [164]). Draft genome sequence of an Armillaria species from Zimbabwe Introduction The genus Armillaria includes at least 38 species, most of which are facultative necrotrophs (Gregory and Rishbeth [49]). A total of 11,570 gene models were predicted from this new genome assembly, which is 1377 more than the 10,193 gene models predicted from a previously published Illumina-based genome assembly and annotation (Wingfield et al. [160]). [Extracted from the article]