학술논문

xtalPiMS: A PiMS-based web application for the management and monitoring of crystallization trials
Document Type
Article
Source
Journal of Structural Biology. Aug2011, Vol. 175 Issue 2, p230-235. 6p.
Subject
*PROTEIN structure
*CRYSTALLIZATION
*DATABASES
*ROBOTICS
*JAVA programming language
*IMS (DL/I) (Computer system)
*APPLICATION software
Language
ISSN
1047-8477
Abstract
Abstract: A major advance in protein structure determination has been the advent of nanolitre-scale crystallization and (in a high-throughput environment) the development of robotic systems for storing and imaging crystallization trials. Most of these trials are carried out in 96-well (or higher density) plates and managing them is a significant information management challenge. We describe xtalPiMS, a web-based application for the management and monitoring of crystallization trials. xtalPiMS has a user-interface layer based on the standards of the Protein Information Management System (PiMS) and a database layer which links the crystallization trial images to the meta-data associated with a particular crystallization trial. The user interface has been optimized for the efficient monitoring of high-throughput environments with three different automated imagers and work to support a fourth imager is in progress, but it can even be of use without robotics. The database can either be a PiMS database or a legacy database for which a suitable mapping layer has been developed. [Copyright &y& Elsevier]