학술논문

CovCopCan: An efficient tool to detect Copy Number Variation from amplicon sequencing data in inherited diseases and cancer.
Document Type
Article
Source
PLoS Computational Biology. 2/12/2020, Vol. 16 Issue 2, p1-13. 13p. 3 Charts, 7 Graphs.
Subject
*GENETIC disorders
*CANCER cells
*MOLECULAR diagnosis
*CANCER
*GENETICISTS
*BREAST cancer prognosis
Language
ISSN
1553-734X
Abstract
Molecular diagnosis is an essential step of patient care. An increasing number of Copy Number Variations (CNVs) have been identified that are involved in inherited and somatic diseases. However, there are few existing tools to identify them among amplicon sequencing data generated by Next Generation Sequencing (NGS). We present here a new tool, CovCopCan, that allows the rapid and easy detection of CNVs in inherited diseases, as well as somatic data of patients with cancer, even with a low ratio of cancer cells to healthy cells. This tool could be very useful for molecular geneticists to rapidly identify CNVs in an interactive and user-friendly way. [ABSTRACT FROM AUTHOR]