학술논문

Genomic Insights Into the Mechanism of Carbapenem Resistance Dissemination in Enterobacterales From a Tertiary Public Heath Setting in South Asia.
Document Type
Article
Source
Clinical Infectious Diseases. Jan2023, Vol. 76 Issue 1, p119-133. 15p.
Subject
*ANTIBIOTICS
*CEFTRIAXONE
*ACADEMIC medical centers
*SEQUENCE analysis
*CATHETER-related infections
*ENTEROBACTERIACEAE diseases
*CARBAPENEM-resistant bacteria
*PUBLIC health
*COMPARATIVE studies
*INFECTION control
*GENOMICS
*GENOMES
*DESCRIPTIVE statistics
*DISEASE susceptibility
*PUBLIC hospitals
*RESEARCH funding
*MICROBIAL virulence
*PHENOTYPES
*BLOODBORNE infections
*MICROBIAL sensitivity tests
Language
ISSN
1058-4838
Abstract
Summary 10.6% patients were CRE positive. Only 27% patients were prescribed at least 1 antibiotic to which infecting pathogen was susceptible. Burn and ICU admission and antibiotics exposures facilitate CRE acquisition. Escherichia coli ST167 was the dominant CRE clone. Background Given the high prevalence of multidrug resistance (MDR) across South Asian (SA) hospitals, we documented the epidemiology of carbapenem-resistant Enterobacterales (CRE) infections at Dhaka Medical College Hospital between October 2016 and September 2017. Methods We enrolled patients and collected epidemiology and outcome data. All Enterobacterales were characterized phenotypically and by whole-genome sequencing. Risk assessment for the patients with CRE was performed compared with patients with carbapenem-susceptible Enterobacterales (CSE). Results 10.6% of all 1831 patients with a clinical specimen collected had CRE. In-hospital 30-day mortality was significantly higher with CRE [50/180 (27.8%)] than CSE [42/312 (13.5%)] (P =.001); however, for bloodstream infections, this was nonsignificant. Of 643 Enterobacterales isolated, 210 were CRE; bla NDM was present in 180 isolates, bla OXA-232 in 26, bla OXA-181 in 24, and bla KPC-2 in 5. Despite this, ceftriaxone was the most commonly prescribed empirical antibiotic and only 27% of patients were prescribed at least 1 antibiotic to which their infecting pathogen was susceptible. Significant risk factors for CRE isolation included burns unit and intensive care unit admission, and prior exposure to levofloxacin, amikacin, clindamycin, and meropenem. Escherichia coli ST167 was the dominant CRE clone. Clustering suggested clonal transmission of Klebsiella pneumoniae ST15 and the MDR hypervirulent clone, ST23. The major trajectories involved in horizontal gene transfer were IncFII and IncX3, IS 26 , and Tn 3. Conclusions This is the largest study from an SA public hospital combining outcome, microbiology, and genomics. The findings indicate the urgent implementation of targeted diagnostics, appropriate antibiotic use, and infection-control interventions in SA public institutions. [ABSTRACT FROM AUTHOR]