학술논문

Atomic resolution studies of S1 nuclease complexes reveal details of RNA interaction with the enzyme despite multiple lattice‐translocation defects.
Document Type
Article
Source
Acta Crystallographica: Section D, Structural Biology. Oct2022, Vol. 78 Issue 10, p1194-1209. 16p.
Subject
*CATALYTIC RNA
*PROTEIN crystallography
*X-ray crystallography
*KOJI
*RNA
Language
ISSN
0907-4449
Abstract
S1 nuclease from Aspergillus oryzae is a single‐strand‐specific nuclease from the S1/P1 family that is utilized in biochemistry and biotechnology. S1 nuclease is active on both RNA and DNA but with differing catalytic efficiencies. This study clarifies its catalytic properties using a thorough comparison of differences in the binding of RNA and DNA in the active site of S1 nuclease based on X‐ray structures, including two newly solved complexes of S1 nuclease with the products of RNA cleavage at atomic resolution. Conclusions derived from this comparison are valid for the whole S1/P1 nuclease family. For proper model building and refinement, multiple lattice‐translocation defects present in the measured diffraction data needed to be solved. Two different approaches were tested and compared. Correction of the measured intensities proved to be superior to the use of the dislocation model of asymmetric units with partial occupancy of individual chains. As the crystals suffered from multiple lattice translocations, equations for their correction were derived de novo. The presented approach to the correction of multiple lattice‐translocation defects may help to solve similar problems in the field of protein X‐ray crystallography. [ABSTRACT FROM AUTHOR]