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Kurta, Khrystyna; Olivera Fedi, Mariano; Baker, Kendall; Barker, Tom; Catchpole, Leah; Ciofi, Claudio; Cocco, Arianna; Collins, Joanna; Diedericks, Genevieve; Diroma, Maria Angela; Durrant, Alex; Hindar, Kjetil; Iannucci, Alessio; Irish, Naomi; Knitlhoffer, Vanda; Laikre, Linda; Leitão, Henrique G.; Lucchini, Sacha; McTaggart, Seanna; Pálsson, Arnar; Pettersson, Mats E.; Ryman, Nils; Snorrason, Sigurður S.; Svardal, Hannes; Swarbreck, David; Waterhouse, Robert M.; Watkins, Christopher; Wood, Jonathan M. D.; Xiao, Han; Gharbi, Karim; Jónsson, Zophonías O.; Andersson, Leif

Molecular Ecology. 34(19)

Golubova, D.; Salmon, M.; Su, H.; Tansley, C.; Kaithakottil, GG; Linsmith, G.; Schudoma, C.; Swarbreck, D.; O’Connell, MA; Patron, NJ

Nature Communications. 16(1)

Jamie McGowan; Estelle S. Kilias; James Lipscombe; Elisabet Alacid; Tom Barker; Leah Catchpole; Seanna McTaggart; Sally D. Warring; Karim Gharbi; Thomas A. Richards; Neil Hall; David Swarbreck

mSphere, Vol 10, Iss 9 (2025)

Alzahrani, S.; Applegate, C.; Swarbreck, D.; Dalmay, T.; Folkes, L.; Moulton, V.

IEEE/ACM Transactions on Computational Biology and Bioinformatics IEEE/ACM Trans. Comput. Biol. and Bioinf. Computational Biology and Bioinformatics, IEEE/ACM Transactions on. 19(6):3374-3383 Jan, 2022

White B; Earlham Institute, Norwich Research Park, Norwich, UK.; Lux T; PGSB Plant Genome and Systems Biology, Helmholtz Center Munich, German Research Center for Environmental Health, Neuherberg, Germany.; Rusholme-Pilcher R; Earlham Institute, Norwich Research Park, Norwich, UK.; Juhász A; Australian Research Council Centre of Excellence for Innovations in Peptide and Protein Science, School of Science, Edith Cowan University, Joondalup, WA, Australia.; Kaithakottil G; Earlham Institute, Norwich Research Park, Norwich, UK.; Duncan S; Earlham Institute, Norwich Research Park, Norwich, UK.; John Innes Centre, Norwich Research Park, Norwich, UK.; Simmonds J; John Innes Centre, Norwich Research Park, Norwich, UK.; Rees H; Earlham Institute, Norwich Research Park, Norwich, UK.; Wright J; Earlham Institute, Norwich Research Park, Norwich, UK.; Colmer J; Earlham Institute, Norwich Research Park, Norwich, UK.; Ward S; Earlham Institute, Norwich Research Park, Norwich, UK.; Joynson R; Earlham Institute, Norwich Research Park, Norwich, UK.; Limagrain Europe, Clermont-Ferrand, Auvergne-Rhône-Alpes, France.; Coombes B; Earlham Institute, Norwich Research Park, Norwich, UK.; Irish N; Earlham Institute, Norwich Research Park, Norwich, UK.; Henderson S; Earlham Institute, Norwich Research Park, Norwich, UK.; Barker T; Earlham Institute, Norwich Research Park, Norwich, UK.; Chapman H; Earlham Institute, Norwich Research Park, Norwich, UK.; Catchpole L; Earlham Institute, Norwich Research Park, Norwich, UK.; Gharbi K; Earlham Institute, Norwich Research Park, Norwich, UK.; Bose U; Australian Research Council Centre of Excellence for Innovations in Peptide and Protein Science, School of Science, Edith Cowan University, Joondalup, WA, Australia.; CSIRO Agriculture and Food, St Lucia, QLD, Australia.; Okada M; Department of Evolutionary Biology and Environmental Studies, University of Zurich, Zurich, Switzerland.; Kihara Institute for Biological Research, Yokohama City University, Yokohama, Japan.; Graduate School of Science and Technology, Niigata University, Niigata, Japan.; Handa H; Graduate School of Life and Environmental Sciences, Kyoto Prefectural University, Kyoto, Japan.; Nasuda S; Graduate School of Agriculture, Kyoto University, Kyoto, Japan.; Shimizu KK; Department of Evolutionary Biology and Environmental Studies, University of Zurich, Zurich, Switzerland.; Kihara Institute for Biological Research, Yokohama City University, Yokohama, Japan.; Gundlach H; PGSB Plant Genome and Systems Biology, Helmholtz Center Munich, German Research Center for Environmental Health, Neuherberg, Germany.; Lang D; PGSB Plant Genome and Systems Biology, Helmholtz Center Munich, German Research Center for Environmental Health, Neuherberg, Germany.; Bundeswehr Institute of Microbiology, Munich, Germany.; Naamati G; EMBL-EBI, Wellcome Genome Campus, Hinxton, Cambridgeshire, UK.; Legg EJ; Syngenta Crop Protection, Research Triangle Park, Durham, NC, USA.; Bharti AK; Syngenta Crop Protection, Research Triangle Park, Durham, NC, USA.; Colgrave ML; Australian Research Council Centre of Excellence for Innovations in Peptide and Protein Science, School of Science, Edith Cowan University, Joondalup, WA, Australia.; CSIRO Agriculture and Food, St Lucia, QLD, Australia.; Haerty W; Earlham Institute, Norwich Research Park, Norwich, UK.; Uauy C; John Innes Centre, Norwich Research Park, Norwich, UK.; Swarbreck D; Earlham Institute, Norwich Research Park, Norwich, UK.; Borrill P; John Innes Centre, Norwich Research Park, Norwich, UK.; Poland JA; Plant Science Program, Biological and Environmental Science and Engineering Division, King Abdullah University of Science and Technology (KAUST), Thuwal, Saudi Arabia.; Krattinger SG; Plant Science Program, Biological and Environmental Science and Engineering Division, King Abdullah University of Science and Technology (KAUST), Thuwal, Saudi Arabia.; Stein N; Crop Plant Genetics, Institute of Agricultural and Nutritional Sciences, Martin Luther University of Halle-Wittenberg, Halle (Saale), Germany.; Leibniz Institute of Plant Genetics and Crop Plant Research (IPK) Gatersleben, Seeland, Germany.; Mayer KFX; PGSB Plant Genome and Systems Biology, Helmholtz Center Munich, German Research Center for Environmental Health, Neuherberg, Germany.; School of Life Sciences, Technical University Munich, Freising, Germany.; Pozniak C; Crop Development Centre, The University of Saskatchewan, Saskatoon, SK, Canada.; Spannagl M; PGSB Plant Genome and Systems Biology, Helmholtz Center Munich, German Research Center for Environmental Health, Neuherberg, Germany. manuel.spannagl@helmholtz-muenchen.de.; Centre for Crop & Food Innovation, Food Futures Institute, Murdoch University, Murdoch, WA, Australia. manuel.spannagl@helmholtz-muenchen.de.; Hall A; Earlham Institute, Norwich Research Park, Norwich, UK. anthony.hall@earlham.ac.uk.; School of Biological Sciences, University of East Anglia, Norwich, UK. anthony.hall@earlham.ac.uk.

Publisher: Nature Pub. Group Country of Publication: England NLM ID: 101528555 Publication Model: Electronic Cited Medium: Internet ISSN: 2041-1723 (Electronic) Linking ISSN: 20411723 NLM ISO Abbreviation: Nat Commun Subsets: MEDLINE

Surbhi Grewal; Cai-yun Yang; Ksenia Krasheninnikova; Joanna Collins; Jonathan M. D. Wood; Stephen Ashling; Duncan Scholefield; Gemy G. Kaithakottil; David Swarbreck; Eric Yao; Taner Z. Sen; Ian P. King; Julie King

Scientific Data, Vol 12, Iss 1, Pp 1-12 (2025)

Lawniczak, Mara K. N.; Durbin, Richard; Flicek, Paul; Lindblad-Toh, Kerstin; Wei, Xiaofeng; Archibald, John M.; Baker, William J.; Belov, Katherine; Blaxter, Mark L.; Bonet, Tomas Marques; Childers, Anna K.; Coddington, Jonathan A.; Crandall, Keith A.; Crawford, Andrew J.; Davey, Robert P.; Di Palma, Federica; Fang, Qi; Haerty, Wilfried; Hall, Neil; Hoff, Katharina J.; Howe, Kerstin; Jarvis, Erich D.; Johnson, Warren E.; Johnson, Rebecca N.; Kersey, Paul J.; Liu, Xin; Lopez, Jose Victor; Myers, Eugene W.; Pettersson, Olga Vinnere; Phillippy, Adam M.; Poelchau, Monica F.; Pruitt, Kim D.; Rhie, Arang; Castilla-Rubio, Juan Carlos; Sahu, Sunil Kumar; Salmon, Nicholas A.; Soltis, Pamela S.; Swarbreck, David; Thibaud-Nissen, Françoise; Wang, Sibo; Wegrzyn, Jill L.; Zhang, Guojie; Zhang, He; Lewin, Harris A.; Richards, Stephen

Proceedings of the National Academy of Sciences of the United States of America, 2022 Jan . 119(4), 1-8.

Mark McMullan; Lawrence Percival-Alwyn; Gemy G Kaithakottil; Laura-Jayne Gardiner; Rowena Hill; Hélène Yvanne; Michelle Grey; Kevin Sawford; Sabrina Jaye Ward; Ross Low; Sally D Warring; Darren Heavens; Ned Peel; Jakob Kroboth; Mark Stevens; David Swarbreck; Matt D Clark; Neil Hall

eLife, Vol 14 (2025)

Wright, J.; Baker, K; Barker, T.; Cathpole, L.; Durrant, A.; Fraser, F.; Gharbi, K.; Harrison, C.; Henderson, S; Irish, N.; Kaithakottil, G.; Knitlhoffer, V.; Leitch, I.; Li, J; Lucchini, S; Neve, P.; Powell, R; Rees, H; Swarbreck, D.; Watkins, C.; Wood, J.; McTaggart, S.; Hall, A.; Macgregor, D.

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Wright, J, Baker, K, Barker, T, Catchpole, L, Durrant, A, Fraser, F, Gharbi, K, Harrison, C, Henderson, S, Irish, N, Kaithakottil, G, Leitch, I J, Li, J, Lucchini, S, Neve, P, Powell, R, Rees, H, Swarbreck, D, Watkins, C, Wood, J, McTaggart, S, Hall, A & MacGregor, D 2024, ' Chromosome-scale genome assembly and de novo annotation of Alopecurus aequalis ', Scientific Data, vol. 11, 1368 . https://doi.org/10.1038/s41597-024-04222-y

G. J. Etherington; W. Nash; A. Ciezarek; T. K. Mehta; A. Barria; C. Peñaloza; M. G. Q. Khan; A. Durrant; N. Forrester; F. Fraser; N. Irish; G. G. Kaithakottil; J. Lipscombe; T. Trong; C. Watkins; D. Swarbreck; E. Angiolini; A. Cnaani; K. Gharbi; R. D. Houston; J. A. H. Benzie; W. Haerty

BMC Genomics, Vol 23, Iss 1, Pp 1-16 (2022)

Hill R; Earlham Institute, Norwich Research Park, Norwich, NR4 7UZ, UK. Rowena.Hill@earlham.ac.uk.; Grey M; Earlham Institute, Norwich Research Park, Norwich, NR4 7UZ, UK.; Fedi MO; Earlham Institute, Norwich Research Park, Norwich, NR4 7UZ, UK.; Smith D; Rothamsted Research, Harpenden, AL5 2JQ, UK.; John Innes Centre, Norwich, Norfolk, NR4 7UH, UK.; Canning G; Rothamsted Research, Harpenden, AL5 2JQ, UK.; Ward SJ; Earlham Institute, Norwich Research Park, Norwich, NR4 7UZ, UK.; Irish N; Earlham Institute, Norwich Research Park, Norwich, NR4 7UZ, UK.; Smith J; Rothamsted Research, Harpenden, AL5 2JQ, UK.; McMillan VE; NIAB, 93 Lawrence Weaver Road, Cambridge, CB3 0LE, UK.; Hammond J; Rothamsted Research, Harpenden, AL5 2JQ, UK.; Osborne SJ; Rothamsted Research, Harpenden, AL5 2JQ, UK.; AHDB, Siskin Parkway East, Middlemarch Business Park, Coventry, CV3 4PE, UK.; Reynolds G; Earlham Institute, Norwich Research Park, Norwich, NR4 7UZ, UK.; Smith E; Earlham Institute, Norwich Research Park, Norwich, NR4 7UZ, UK.; Chancellor T; Rothamsted Research, Harpenden, AL5 2JQ, UK.; Crop Science Centre, Department of Plant Sciences, University of Cambridge, 93 Lawrence Weaver Road, Cambridge, CB3 0LE, UK.; Swarbreck D; Earlham Institute, Norwich Research Park, Norwich, NR4 7UZ, UK.; Hall N; Earlham Institute, Norwich Research Park, Norwich, NR4 7UZ, UK.; School of Biological Sciences, University of East Anglia, Norwich, NR4 7TJ, UK.; Palma-Guerrero J; Rothamsted Research, Harpenden, AL5 2JQ, UK.; Research Institute of Organic Agriculture Fibl, Frick, 5070, Switzerland.; Hammond-Kosack KE; Rothamsted Research, Harpenden, AL5 2JQ, UK. Kim.Hammond-Kosack@rothamsted.ac.uk.; McMullan M; Earlham Institute, Norwich Research Park, Norwich, NR4 7UZ, UK. Mark.McMullan@earlham.ac.uk.

Publisher: BioMed Central Country of Publication: England NLM ID: 100965258 Publication Model: Electronic Cited Medium: Internet ISSN: 1471-2164 (Electronic) Linking ISSN: 14712164 NLM ISO Abbreviation: BMC Genomics Subsets: MEDLINE

Anne Edwards; Isaac Njaci; Abhimanyu Sarkar; Zhouqian Jiang; Gemy George Kaithakottil; Christopher Moore; Jitender Cheema; Clare E. M. Stevenson; Martin Rejzek; Petr Novák; Marielle Vigouroux; Martin Vickers; Roland H. M. Wouters; Pirita Paajanen; Burkhard Steuernagel; Jonathan D. Moore; Janet Higgins; David Swarbreck; Stefan Martens; Colin Y. Kim; Jing-Ke Weng; Sagadevan Mundree; Benjamin Kilian; Shiv Kumar; Matt Loose; Levi Yant; Jiří Macas; Trevor L. Wang; Cathie Martin; Peter M. F. Emmrich

Nature Communications, Vol 14, Iss 1, Pp 1-16 (2023)

Jamie McGowan; Estelle S. Kilias; Elisabet Alacid; James Lipscombe; Benjamin H. Jenkins; Karim Gharbi; Gemy G. Kaithakottil; Iain C. Macaulay; Seanna McTaggart; Sally D. Warring; Thomas A. Richards; Neil Hall; David Swarbreck

PLoS Genetics, Vol 19, Iss 10 (2023)

Etherington, G.; Ciezarek, A.; Mehta, T.; Barker, T.; Durrant, A.; Fraser, F.; Henderson, S.; Irish, N.; Kaithakottil, G.; Knitlhoffer, V.; Watkins, C.; Swarbreck, D.; Gharbi, K.; Haerty, W.; Ali, S.; Trong, T.; Benzie, J.

In: Scientific Reports. (Scientific Reports, December 2025, 15(1))

Edwards, Anne; Njaci, Isaac; Sarkar, Abhimanyu; Jiang, Zhouqian; Kaithakottil, Gemy George; Moore, Christopher; Cheema, Jitender; Stevenson, Clare E. M.; Rejzek, Martin; Novák, Petr; Vigouroux, Marielle; Vickers, Martin; Wouters, Roland H. M.; Paajanen, Pirita; Steuernagel, Burkhard; Moore, Jonathan D.; Higgins, Janet; Swarbreck, David; Martens, Stefan; Kim, Colin Y.; Weng, Jing-Ke; Mundree, Sagadevan; Kilian, Benjamin; Kumar, Shiv; Loose, Matt; Yant, Levi; Macas, Jiří; Wang, Trevor L.; Martin, Cathie; Emmrich, Peter M. F.

Nature Communications. 14(1)

Hill R; Earlham Institute, Norwich, UK.; McGowan J; Earlham Institute, Norwich, UK.; Brabcová V; Laboratory of Environmental Microbiology, Institute of Microbiology of the Czech Academy of Sciences, Prague, Czech Republic.; McTaggart S; Earlham Institute, Norwich, UK.; Irish N; Earlham Institute, Norwich, UK.; Barker T; Earlham Institute, Norwich, UK.; Knitlhoffer V; Earlham Institute, Norwich, UK.; Lucchini S; Earlham Institute, Norwich, UK.; Baker K; Earlham Institute, Norwich, UK.; Catchpole L; Earlham Institute, Norwich, UK.; Watkins C; Earlham Institute, Norwich, UK.; Gharbi K; Earlham Institute, Norwich, UK.; Kaithakottil G; Earlham Institute, Norwich, UK.; Tracey A; Tree of Life, Wellcome Sanger Institute, Hinxton, UK.; Wood JMD; Tree of Life, Wellcome Sanger Institute, Hinxton, UK.; Tomšovský M; Department of Forest Protection and Wildlife Management, Faculty of Forestry and Wood Technology, Mendel University in Brno, Brno, Czech Republic.; Baldrian P; Laboratory of Environmental Microbiology, Institute of Microbiology of the Czech Academy of Sciences, Prague, Czech Republic.; Swarbreck D; Earlham Institute, Norwich, UK.; Hall N; Earlham Institute, Norwich, UK.; School of Biological Sciences, University of East Anglia, Norwich, UK.

Publisher: Oxford University Press Country of Publication: England NLM ID: 101509707 Publication Model: Print Cited Medium: Internet ISSN: 1759-6653 (Electronic) Linking ISSN: 17596653 NLM ISO Abbreviation: Genome Biol Evol Subsets: MEDLINE

Rabanus-Wallace, M. Timothy; Hackauf, Bernd; Mascher, Martin; Lux, Thomas; Wicker, Thomas; Gundlach, Heidrun; Baez, Mariana; Houben, Andreas; Mayer, Klaus F. X.; Guo, Liangliang; Poland, Jesse; Pozniak, Curtis J.; Walkowiak, Sean; Melonek, Joanna; Praz, Coraline R.; Schreiber, Mona; Budak, Hikmet; Heuberger, Matthias; Steuernagel, Burkhard; Wulff, Brande; Börner, Andreas; Byrns, Brook; Čížková, Jana; Fowler, D. Brian; Fritz, Allan; Himmelbach, Axel; Kaithakottil, Gemy; Keilwagen, Jens; Keller, Beat; Konkin, David; Larsen, Jamie; Li, Qiang; Myśków, Beata; Padmarasu, Sudharsan; Rawat, Nidhi; Sesiz, Uğur; Biyiklioglu-Kaya, Sezgi; Sharpe, Andy; Šimková, Hana; Small, Ian; Swarbreck, David; Toegelová, Helena; Tsvetkova, Natalia; Voylokov, Anatoly V.; Vrána, Jan; Bauer, Eva; Bolibok-Bragoszewska, Hanna; Doležel, Jaroslav; Hall, Anthony; Jia, Jizeng; Korzun, Viktor; Laroche, André; Ma, Xue-Feng; Ordon, Frank; Özkan, Hakan; Rakoczy-Trojanowska, Monika; Scholz, Uwe; Schulman, Alan H.; Siekmann, Dörthe; Stojałowski, Stefan; Tiwari, Vijay K.; Spannagl, Manuel; Stein, Nils

Nature Genetics. 53(4):564-573

McGowan J; Earlham Institute, Norwich Research Park, Norwich, United Kingdom.; Richards TA; Department of Biology, University of Oxford, Oxford, United Kingdom.; Hall N; Earlham Institute, Norwich Research Park, Norwich, United Kingdom.; School of Biological Sciences, University of East Anglia, Norwich, United Kingdom.; Swarbreck D; Earlham Institute, Norwich Research Park, Norwich, United Kingdom.

Publisher: Public Library of Science Country of Publication: United States NLM ID: 101239074 Publication Model: eCollection Cited Medium: Internet ISSN: 1553-7404 (Electronic) Linking ISSN: 15537390 NLM ISO Abbreviation: PLoS Genet Subsets: MEDLINE

Grewal S; Wheat Research Centre, Department of Plant and Crop Sciences, School of Biosciences, University of Nottingham, Loughborough, LE12 5RD, UK. surbhi.grewal@nottingham.ac.uk.; Yang CY; Wheat Research Centre, Department of Plant and Crop Sciences, School of Biosciences, University of Nottingham, Loughborough, LE12 5RD, UK.; Scholefield D; Wheat Research Centre, Department of Plant and Crop Sciences, School of Biosciences, University of Nottingham, Loughborough, LE12 5RD, UK.; Ashling S; Wheat Research Centre, Department of Plant and Crop Sciences, School of Biosciences, University of Nottingham, Loughborough, LE12 5RD, UK.; Ghosh S; Earlham Institute, Norwich Research Park, Norwich, NR4 7UZ, UK.; Swarbreck D; Earlham Institute, Norwich Research Park, Norwich, NR4 7UZ, UK.; Collins J; Genome Reference Informatics Team, Wellcome Sanger Institute, Wellcome Trust Genome Campus, Hinxton, CB10 1RQ, UK.; Yao E; University of California, Department of Bioengineering, Berkeley, CA, 94720, USA.; United States Department of Agriculture-Agricultural Research Service, Western Regional Research Center, Crop Improvement and Genetics Research Unit, 800 Buchanan St., Albany, CA, 94710, USA.; Sen TZ; University of California, Department of Bioengineering, Berkeley, CA, 94720, USA.; United States Department of Agriculture-Agricultural Research Service, Western Regional Research Center, Crop Improvement and Genetics Research Unit, 800 Buchanan St., Albany, CA, 94710, USA.; Wilson M; University of Nottingham, University Park, Nottingham, NG7 2RD, UK.; Yant L; University of Nottingham, University Park, Nottingham, NG7 2RD, UK.; King IP; Wheat Research Centre, Department of Plant and Crop Sciences, School of Biosciences, University of Nottingham, Loughborough, LE12 5RD, UK.; King J; Wheat Research Centre, Department of Plant and Crop Sciences, School of Biosciences, University of Nottingham, Loughborough, LE12 5RD, UK.

Publisher: Nature Publishing Group Country of Publication: England NLM ID: 101640192 Publication Model: Electronic Cited Medium: Internet ISSN: 2052-4463 (Electronic) Linking ISSN: 20524463 NLM ISO Abbreviation: Sci Data Subsets: MEDLINE

Crost, E. H.; Tailford, L. E.; Monestier, M.; Swarbreck, D.; Henrissat, Bernard; Crossman, L. C.; Juge, N.

Gut Microbes