학술논문
Complete genome sequence analysis of the multidrug resistant Aeromonas veronii isolated for the first time from stinging catfish (Shing fish) in Bangladesh.
Document Type
Academic Journal
Author
Rahman MM; Department of Microbiology and Hygiene, Bangladesh Agricultural University, Mymensingh, Bangladesh.; Sadekuzzaman M; Central Disease Investigation Laboratory, Department of Livestock Services, Dhaka, Bangladesh.; Rahman MA; Bangladesh Fisheries Research Institute, Mymensingh, Bangladesh.; Siddique MP; Department of Microbiology and Hygiene, Bangladesh Agricultural University, Mymensingh, Bangladesh.; Uddin MA; Department of Microbiology and Hygiene, Bangladesh Agricultural University, Mymensingh, Bangladesh.; Haque ME; Department of Microbiology and Hygiene, Bangladesh Agricultural University, Mymensingh, Bangladesh.; Chowdhury MGA; Central Disease Investigation Laboratory, Department of Livestock Services, Dhaka, Bangladesh.; Khasruzzaman AKM; Department of Microbiology and Hygiene, Bangladesh Agricultural University, Mymensingh, Bangladesh.; Rahman MT; Department of Microbiology and Hygiene, Bangladesh Agricultural University, Mymensingh, Bangladesh.; Hossain MT; Department of Microbiology and Hygiene, Bangladesh Agricultural University, Mymensingh, Bangladesh.; Islam MA; Department of Microbiology and Hygiene, Bangladesh Agricultural University, Mymensingh, Bangladesh.
Source
Publisher: Network for the Veterinarians of Bangladesh Country of Publication: Bangladesh NLM ID: 101647585 Publication Model: eCollection Cited Medium: Internet ISSN: 2311-7710 (Electronic) Linking ISSN: 23117710 NLM ISO Abbreviation: J Adv Vet Anim Res Subsets: PubMed not MEDLINE
Subject
Language
English
Abstract
Objective: Whole genome sequencing (WGS) of Aeromonas veronii Alim_AV_1000 isolated from ulcerative lesions of Shing fish (stringing catfish; Heteropneustes fossilis ) was performed during the outbreak year 2021.
Materials and Methods: Using next-generation sequencing (Illumina) technology, WGS was accomplished, resulting in the sequencing, assembly, and analysis of the entire genome of the A. veronii strain. Moreover, the genomic features, virulence factors, antimicrobial resistome, and phylogenetic analysis for the molecular evolution of this strain were also examined.
Results: The genome size of the A. veronii Alim_AV_1000 strain was 4,494,515 bp, with an average G+C content of 58.87%. Annotation revealed the known transporters and genes linked to virulence, drug targets, and antimicrobial resistance.
Conclusion: The findings of the phylogenetic analysis revealed that the strain of the present study has a close relationship with the China strain TH0426 and strain B56. This study provides novel information on A. veronii isolated from Shing fish in Bangladesh.
Competing Interests: The authors confirmed no competing interests.
(Copyright: © Journal of Advanced Veterinary and Animal Research.)
Materials and Methods: Using next-generation sequencing (Illumina) technology, WGS was accomplished, resulting in the sequencing, assembly, and analysis of the entire genome of the A. veronii strain. Moreover, the genomic features, virulence factors, antimicrobial resistome, and phylogenetic analysis for the molecular evolution of this strain were also examined.
Results: The genome size of the A. veronii Alim_AV_1000 strain was 4,494,515 bp, with an average G+C content of 58.87%. Annotation revealed the known transporters and genes linked to virulence, drug targets, and antimicrobial resistance.
Conclusion: The findings of the phylogenetic analysis revealed that the strain of the present study has a close relationship with the China strain TH0426 and strain B56. This study provides novel information on A. veronii isolated from Shing fish in Bangladesh.
Competing Interests: The authors confirmed no competing interests.
(Copyright: © Journal of Advanced Veterinary and Animal Research.)