학술논문

A genome-wide association study in American Indians implicates DNER as a susceptibility locus for type 2 diabetes
Document Type
Report
Source
Diabetes. January 1, 2014, Vol. 63 Issue 1, p369, 8 p.
Subject
Genetic variation -- Identification and classification
Genetic susceptibility -- Research
Type 2 diabetes -- Research -- Analysis -- Genetic aspects
Health
Language
English
ISSN
0012-1797
Abstract
Most genetic variants associated with type 2 diabetes mellitus (T2DM) have been identified through genome-wide association studies (GWASs) in Europeans. The current study reports a GWAS for young-onset T2DM in American Indians. Participants were selected from a longitudinal study conducted in Pima Indians and included 278 cases with diabetes with onset before 25 years of age, 295 nondiabetic controls ≥ 45 years of age, and 267 siblings of cases or controls. Individuals were genotyped on a ~1M single nucleotide polymorphism (SNP) array, resulting in 453,654 SNPs with minor allele frequency >0.05. SNPs were analyzed for association in cases and controls, and a family-based association test was conducted. Tag SNPs (n = 311) were selected for 499 SNPs associated with diabetes (P < 0.0005 in case-control analyses or P < 0.0003 in family-based analyses), and these SNPs were genotyped in up to 6,834 additional Pima Indians to assess replication. Rs1861612 in DNER was associated with T2DM (odds ratio = 1.29 per copy of the T allele; P = 6.6 x [10.sup.-6], which represents genome-wide significance accounting for the number of effectively independent SNPs analyzed). Transfection studies in murine pancreatic β-cells suggested that DNER regulates expression of notch signaling pathway genes. These studies implicate DNER as a susceptibility gene for T2DM in American Indians. Diabetes 2014;63:369-376 | DOI: 10.2337/db13-0416
A number of genetic variants associated with type 2 diabetes mellitus (T2DM) have been identified (1-6). Since most established susceptibility variants were detected by genome-wide association studies (GWASs) in Europeans, [...]