학술논문

Analytical Guidelines for co-fractionation Mass Spectrometry Obtained through Global Profiling of Gold Standard Saccharomyces cerevisiaeProtein Complexes
Document Type
Article
Source
Molecular and Cellular Proteomics (MCP Online); November 2020, Vol. 19 Issue: 11 p1876-1895, 20p
Subject
Language
ISSN
15359476; 15359484
Abstract
To obtain guidelines for the best practice characterization of protein complexes using co-fractionation mass spectrometry (CF-MS), novel and published Saccharomyces cerevisiaeCF-MS data sets are thoroughly evaluated using high proteome coverage libraries of yeast gold standard complexes. It is found that near-maximum recall of complexes can be achieved with fewer samples than published studies, several similarity scoring metrics – such as Spearman and Kendall correlations – are underutilized, and genomic data integration is generally unsuitable for predicting novel complexes in model organisms.