학술논문

Identifying behavioral structure from deep variational embeddings of animal motion.
Document Type
Article
Source
Communications Biology. 11/18/2022, Vol. 5 Issue 1, p1-15. 15p.
Subject
*DEEP learning
*COMMUNITIES
*ORGANIZATIONAL behavior
*LABORATORY mice
*ANIMAL disease models
*MOTION
Language
ISSN
2399-3642
Abstract
Quantification and detection of the hierarchical organization of behavior is a major challenge in neuroscience. Recent advances in markerless pose estimation enable the visualization of high-dimensional spatiotemporal behavioral dynamics of animal motion. However, robust and reliable technical approaches are needed to uncover underlying structure in these data and to segment behavior into discrete hierarchically organized motifs. Here, we present an unsupervised probabilistic deep learning framework that identifies behavioral structure from deep variational embeddings of animal motion (VAME). By using a mouse model of beta amyloidosis as a use case, we show that VAME not only identifies discrete behavioral motifs, but also captures a hierarchical representation of the motif's usage. The approach allows for the grouping of motifs into communities and the detection of differences in community-specific motif usage of individual mouse cohorts that were undetectable by human visual observation. Thus, we present a robust approach for the segmentation of animal motion that is applicable to a wide range of experimental setups, models and conditions without requiring supervised or a-priori human interference. Variational embeddings of animal motion enable automated discovery of discrete behavioural motifs as well as their latent dynamics. [ABSTRACT FROM AUTHOR]