부산대학교 도서관

Chin, Jeffrey; Abeydeera, Nalin; Repasy, Teresa; Rivera-Lugo, Rafael; Mitchell, Gabriel; Nguyen, Vinh Q; Zheng, Weihao; Richards, Alicia; Stevenson, Erica; Swaney, Danielle L; Krogan, Nevan J; Ernst, Joel D; Cox, Jeffery S; Budzik, Jonathan M

PLoS Pathogens. 10/31/2025, Vol. 21 Issue 10, p1-31. 31p.

Krogsaeter EK; Gladstone Data Science and Biotechnology Institute, The J. David Gladstone Institutes, San Francisco, USA.; Quantitative Bioscience Institute, University of California, San Francisco, USA.; Department of Cellular and Molecular Pharmacology, University of California, San Francisco, USA.; McKetney J; Gladstone Data Science and Biotechnology Institute, The J. David Gladstone Institutes, San Francisco, USA.; Quantitative Bioscience Institute, University of California, San Francisco, USA.; Department of Cellular and Molecular Pharmacology, University of California, San Francisco, USA.; Valiente-Banuet L; Department of Neurology, David Geffen School of Medicine, University of California, Los Angeles, USA.; Marquez A; Gladstone Data Science and Biotechnology Institute, The J. David Gladstone Institutes, San Francisco, USA.; Quantitative Bioscience Institute, University of California, San Francisco, USA.; Department of Cellular and Molecular Pharmacology, University of California, San Francisco, USA.; Willis A; Gladstone Data Science and Biotechnology Institute, The J. David Gladstone Institutes, San Francisco, USA.; Quantitative Bioscience Institute, University of California, San Francisco, USA.; Department of Cellular and Molecular Pharmacology, University of California, San Francisco, USA.; Cakir Z; Gladstone Data Science and Biotechnology Institute, The J. David Gladstone Institutes, San Francisco, USA.; Quantitative Bioscience Institute, University of California, San Francisco, USA.; Department of Cellular and Molecular Pharmacology, University of California, San Francisco, USA.; Stevenson E; Gladstone Data Science and Biotechnology Institute, The J. David Gladstone Institutes, San Francisco, USA.; Quantitative Bioscience Institute, University of California, San Francisco, USA.; Department of Cellular and Molecular Pharmacology, University of California, San Francisco, USA.; Jang GM; Gladstone Data Science and Biotechnology Institute, The J. David Gladstone Institutes, San Francisco, USA.; Quantitative Bioscience Institute, University of California, San Francisco, USA.; Department of Cellular and Molecular Pharmacology, University of California, San Francisco, USA.; Rao A; Gladstone Institute of Neurological Disease, The J. David Gladstone Institutes, San Francisco, USA.; Developmental and Stem Cell Biology Graduate Program, University of California, San Francisco, USA.; Li E; Institute for Neurodegenerative Diseases, University of California, San Francisco, USA.; Biomedical Sciences Graduate Program, University of California, San Francisco, USA.; Zhou A; Gladstone Institute of Neurological Disease, The J. David Gladstone Institutes, San Francisco, USA.; Attili A; Institute for Neurodegenerative Diseases, University of California, San Francisco, USA.; Biosciences Internship Program, City College of San Francisco, USA.; Chang TS; Department of Neurology, David Geffen School of Medicine, University of California, Los Angeles, USA.; Kampmann M; Institute for Neurodegenerative Diseases, University of California, San Francisco, USA.; Department of Biochemistry and Biophysics, University of California, San Francisco, USA.; Huang Y; Gladstone Institute of Neurological Disease, The J. David Gladstone Institutes, San Francisco, USA.; Developmental and Stem Cell Biology Graduate Program, University of California, San Francisco, USA.; Biomedical Sciences Graduate Program, University of California, San Francisco, USA.; Neuroscience Graduate Program, University of California, San Francisco, USA.; Gladstone Center for Translational Advancement, Gladstone Institutes, San Francisco, USA.; Departments of Neurology and Pathology, University of California, San Francisco, USA.; Krogan NJ; Gladstone Data Science and Biotechnology Institute, The J. David Gladstone Institutes, San Francisco, USA.; Quantitative Bioscience Institute, University of California, San Francisco, USA.; Department of Cellular and Molecular Pharmacology, University of California, San Francisco, USA.; Swaney DL; Gladstone Data Science and Biotechnology Institute, The J. David Gladstone Institutes, San Francisco, USA.; Quantitative Bioscience Institute, University of California, San Francisco, USA.; Department of Cellular and Molecular Pharmacology, University of California, San Francisco, USA.

Publisher: Taylor & Francis Country of Publication: United States NLM ID: 101265188 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1554-8635 (Electronic) Linking ISSN: 15548627 NLM ISO Abbreviation: Autophagy Subsets: MEDLINE

An, Zhenyi; Fan, Qi-Wen; Wang, Linyu; Yoda, Hiroyuki; Barata, Megumi J; Jimenez-Morales, David; Phillips, Joanna J; Swaney, Danielle L; Stevenson, Erica; Lee, Ethan; Krogan, Nevan; Weiss, William A

Neuro-Oncology; Feb2025, Vol. 27 Issue 2, p383-397, 15p

Suryawanshi RK; Gladstone Institute of Virology, Gladstone Institutes, San Francisco, United States.; Jaishankar P; Department of Pharmaceutical Chemistry, University of California San Francisco, San Francisco, United States.; Correy GJ; Department of Bioengineering and Therapeutic Sciences, University of California San Francisco, San Francisco, United States.; Rachman MM; Department of Pharmaceutical Chemistry, University of California San Francisco, San Francisco, United States.; O'Leary PC; Helen Diller Family Comprehensive Cancer Center, University of California San Francisco, San Francisco, United States.; Taha TY; Gladstone Institute of Virology, Gladstone Institutes, San Francisco, United States.; Quantitative Biosciences Institute (QBI), University of California San Francisco, San Francisco, United States.; Matsui Y; Gladstone Institute of Virology, Gladstone Institutes, San Francisco, United States.; Zapatero-Belinchón FJ; Gladstone Institute of Virology, Gladstone Institutes, San Francisco, United States.; McCavitt-Malvido M; Gladstone Institute of Virology, Gladstone Institutes, San Francisco, United States.; Doruk YU; Helen Diller Family Comprehensive Cancer Center, University of California San Francisco, San Francisco, United States.; Stevens MGV; Helen Diller Family Comprehensive Cancer Center, University of California San Francisco, San Francisco, United States.; Diolaiti ME; Helen Diller Family Comprehensive Cancer Center, University of California San Francisco, San Francisco, United States.; Jogalekar MP; Helen Diller Family Comprehensive Cancer Center, University of California San Francisco, San Francisco, United States.; Chen H; Helen Diller Family Comprehensive Cancer Center, University of California San Francisco, San Francisco, United States.; Richards AL; Quantitative Biosciences Institute (QBI), University of California San Francisco, San Francisco, United States.; Department of Cellular and Molecular Pharmacology, University of California San Francisco, San Francisco, United States.; Data Science and Biotechnology Institute, Gladstone Institutes, San Francisco, United States.; Kongpracha P; Quantitative Biosciences Institute (QBI), University of California San Francisco, San Francisco, United States.; Department of Cellular and Molecular Pharmacology, University of California San Francisco, San Francisco, United States.; Data Science and Biotechnology Institute, Gladstone Institutes, San Francisco, United States.; Bali S; Department of Bioengineering and Therapeutic Sciences, University of California San Francisco, San Francisco, United States.; Montano M; Gladstone Institute of Virology, Gladstone Institutes, San Francisco, United States.; Rosecrans J; Gladstone Institute of Virology, Gladstone Institutes, San Francisco, United States.; Matthay M; Data Science and Biotechnology Institute, Gladstone Institutes, San Francisco, United States.; Togo T; Department of Pharmaceutical Chemistry, University of California San Francisco, San Francisco, United States.; Gonciarz RL; Department of Pharmaceutical Chemistry, University of California San Francisco, San Francisco, United States.; Gopalkrishnan S; Quantitative Biosciences Institute (QBI), University of California San Francisco, San Francisco, United States.; Neitz RJ; Department of Pharmaceutical Chemistry, University of California San Francisco, San Francisco, United States.; Small Molecule Discovery Center, University of California San Francisco, San Francisco, United States.; Krogan NJ; Department of Bioengineering and Therapeutic Sciences, University of California San Francisco, San Francisco, United States.; Quantitative Biosciences Institute (QBI), University of California San Francisco, San Francisco, United States.; Data Science and Biotechnology Institute, Gladstone Institutes, San Francisco, United States.; Swaney DL; Quantitative Biosciences Institute (QBI), University of California San Francisco, San Francisco, United States.; Department of Cellular and Molecular Pharmacology, University of California San Francisco, San Francisco, United States.; Data Science and Biotechnology Institute, Gladstone Institutes, San Francisco, United States.; Shoichet BK; Department of Pharmaceutical Chemistry, University of California San Francisco, San Francisco, United States.; Ott M; Gladstone Institute of Virology, Gladstone Institutes, San Francisco, United States.; Department of Medicine, University of California San Francisco, San Francisco, United States.; Chan Zuckerberg Biohub- San Francisco, San Francisco, San Francisco, United States.; Renslo AR; Department of Pharmaceutical Chemistry, University of California San Francisco, San Francisco, United States.; Ashworth A; Helen Diller Family Comprehensive Cancer Center, University of California San Francisco, San Francisco, United States.; Fraser JS; Department of Bioengineering and Therapeutic Sciences, University of California San Francisco, San Francisco, United States.

Publisher: eLife Sciences Publications, Ltd Country of Publication: England NLM ID: 101579614 Publication Model: Electronic Cited Medium: Internet ISSN: 2050-084X (Electronic) Linking ISSN: 2050084X NLM ISO Abbreviation: Elife Subsets: MEDLINE

San Felipe CJ; Department of Bioengineering and Therapeutic Sciences, University of California, San Francisco, San Francisco, United States.; Batra J; Quantitative Biosciences Institute, University of California, San Francisco, San Francisco, San Francisco, United States.; Gladstone Institute of Data Science and Biotechnology, J. David Gladstone Institutes, San Francisco, United States.; Department of Cellular and Molecular Pharmacology, University of California, San Francisco, San Francisco, United States.; Muralidharan M; Quantitative Biosciences Institute, University of California, San Francisco, San Francisco, San Francisco, United States.; Gladstone Institute of Data Science and Biotechnology, J. David Gladstone Institutes, San Francisco, United States.; Department of Cellular and Molecular Pharmacology, University of California, San Francisco, San Francisco, United States.; Malpotra S; Quantitative Biosciences Institute, University of California, San Francisco, San Francisco, San Francisco, United States.; Gladstone Institute of Data Science and Biotechnology, J. David Gladstone Institutes, San Francisco, United States.; Department of Cellular and Molecular Pharmacology, University of California, San Francisco, San Francisco, United States.; Anand D; Quantitative Biosciences Institute, University of California, San Francisco, San Francisco, San Francisco, United States.; Gladstone Institute of Data Science and Biotechnology, J. David Gladstone Institutes, San Francisco, United States.; Department of Cellular and Molecular Pharmacology, University of California, San Francisco, San Francisco, United States.; Bauer R; Quantitative Biosciences Institute, University of California, San Francisco, San Francisco, San Francisco, United States.; Department of Cellular and Molecular Pharmacology, University of California, San Francisco, San Francisco, United States.; Verba KA; Quantitative Biosciences Institute, University of California, San Francisco, San Francisco, San Francisco, United States.; Department of Cellular and Molecular Pharmacology, University of California, San Francisco, San Francisco, United States.; Swaney DL; Quantitative Biosciences Institute, University of California, San Francisco, San Francisco, San Francisco, United States.; Gladstone Institute of Data Science and Biotechnology, J. David Gladstone Institutes, San Francisco, United States.; Department of Cellular and Molecular Pharmacology, University of California, San Francisco, San Francisco, United States.; Krogan NJ; Quantitative Biosciences Institute, University of California, San Francisco, San Francisco, San Francisco, United States.; Gladstone Institute of Data Science and Biotechnology, J. David Gladstone Institutes, San Francisco, United States.; Department of Cellular and Molecular Pharmacology, University of California, San Francisco, San Francisco, United States.; Grabe M; Department of Pharmaceutical Chemistry, University of California, San Francisco, San Francisco, United States.; Fraser JS; Department of Bioengineering and Therapeutic Sciences, University of California, San Francisco, San Francisco, United States.; Quantitative Biosciences Institute, University of California, San Francisco, San Francisco, San Francisco, United States.

Publisher: eLife Sciences Publications, Ltd Country of Publication: England NLM ID: 101579614 Publication Model: Electronic Cited Medium: Internet ISSN: 2050-084X (Electronic) Linking ISSN: 2050084X NLM ISO Abbreviation: Elife Subsets: MEDLINE

Fossati A; J. David Gladstone Institutes, San Francisco, CA, USA.; Quantitative Biosciences Institute (QBI), University of California San Francisco, San Francisco, CA, USA.; Department of Cellular and Molecular Pharmacology, University of California San Francisco, San Francisco, CA, USA.; Wambi P; Uganda Tuberculosis Implementation Research Consortium, Walimu, Kololo, Kampala, Uganda.; Jaganath D; Institute for Global Health Sciences, Center for Tuberculosis, University of California San Francisco, San Francisco, CA, USA.; Department of Pediatrics, Division of Pediatric Infectious Diseases, University of California San Francisco, San Francisco, CA, USA.; Calderon R; Advanced Research and Health, Lima, Peru.; Castro R; Institute for Global Health Sciences, Center for Tuberculosis, University of California San Francisco, San Francisco, CA, USA.; Department of Medicine, Division of Pulmonary and Critical Care Medicine, University of California San Francisco, San Francisco, CA, USA.; Mohapatra A; Institute for Global Health Sciences, Center for Tuberculosis, University of California San Francisco, San Francisco, CA, USA.; Department of Medicine, Division of Experimental Medicine, University of California San Francisco, San Francisco, California, CA, USA.; McKetney J; J. David Gladstone Institutes, San Francisco, CA, USA.; Quantitative Biosciences Institute (QBI), University of California San Francisco, San Francisco, CA, USA.; Department of Cellular and Molecular Pharmacology, University of California San Francisco, San Francisco, CA, USA.; Luiz J; Department of Pediatrics and Child Health, South African Medical Research Council Unit on Child and Adolescent Health, University of Cape Town, Cape Town, South Africa.; Department of Pediatrics, Dora Nginza Hospital, Gqeberha, South Africa.; Nerurkar R; Institute for Global Health Sciences, Center for Tuberculosis, University of California San Francisco, San Francisco, CA, USA.; Department of Pediatrics, Division of Pediatric Infectious Diseases, University of California San Francisco, San Francisco, CA, USA.; Nkereuwem E; Vaccines and Immunity Theme, MRC Unit The Gambia at the London School of Hygiene and Tropical Medicine, Fajara, The Gambia.; Franke MF; Department of Global Health and Social Medicine, Harvard Medical School, Boston, MA, USA.; Mousavian Z; Division of Infectious Diseases, Department of Medicine Solna, Karolinska Institutet, Stockholm, Sweden.; Department of Global Health, Rollins School of Public Health, Emory University, Atlanta, GA, USA.; Collins JM; Division of Infectious Diseases, Department of Medicine, Emory University School of Medicine, Atlanta, GA, USA.; Sigal GB; Meso Scale Diagnostics, LLC., Rockville, MD, USA.; Segal MR; Department of Epidemiology and Biostatistics, University of California San Francisco, San Francisco, CA, USA.; Kampman B; Vaccines and Immunity Theme, MRC Unit The Gambia at the London School of Hygiene and Tropical Medicine, Fajara, The Gambia.; Charité Center for Global Health, Charité Universitätsmedizin Berlin, Berlin, Germany.; Wobudeya E; Uganda Tuberculosis Implementation Research Consortium, Walimu, Kololo, Kampala, Uganda.; Cattamanchi A; Institute for Global Health Sciences, Center for Tuberculosis, University of California San Francisco, San Francisco, CA, USA.; Division of Pulmonary Diseases and Critical Care Medicine, Department of Medicine, University of California Irvine, Irvine, CA, USA.; Ernst JD; Institute for Global Health Sciences, Center for Tuberculosis, University of California San Francisco, San Francisco, CA, USA.; Department of Medicine, Division of Experimental Medicine, University of California San Francisco, San Francisco, California, CA, USA.; Zar HJ; Department of Pediatrics and Child Health, South African Medical Research Council Unit on Child and Adolescent Health, University of Cape Town, Cape Town, South Africa. heather.zar@uct.ac.za.; Swaney DL; J. David Gladstone Institutes, San Francisco, CA, USA. danielle.swaney@ucsf.edu.; Quantitative Biosciences Institute (QBI), University of California San Francisco, San Francisco, CA, USA. danielle.swaney@ucsf.edu.; Department of Cellular and Molecular Pharmacology, University of California San Francisco, San Francisco, CA, USA. danielle.swaney@ucsf.edu.

Publisher: Nature Pub. Group Country of Publication: England NLM ID: 101528555 Publication Model: Electronic Cited Medium: Internet ISSN: 2041-1723 (Electronic) Linking ISSN: 20411723 NLM ISO Abbreviation: Nat Commun Subsets: MEDLINE

Samelson AJ; Institute for Neurodegenerative Diseases, University of California, San Francisco, San Francisco, CA 94158, USA; Department of Neurology, University of California, Los Angeles, Los Angeles, CA 90095, USA; Department of Biological Chemistry, University of California, Los Angeles, Los Angeles, CA 90095, USA.; Ariqat N; Institute for Neurodegenerative Diseases, University of California, San Francisco, San Francisco, CA 94158, USA.; McKetney J; Quantitative Biosciences Institute (QBI), University of California, San Francisco, San Francisco, CA 94158, USA; Department of Bioengineering and Therapeutic Sciences, University of California, San Francisco, San Francisco, CA 94158, USA; Gladstone Institute of Data Science and Biotechnology, Gladstone Institutes, San Francisco, CA 94158, USA.; Rohanitazangi G; Institute for Neurodegenerative Diseases, University of California, San Francisco, San Francisco, CA 94158, USA.; Parra Bravo C; Institute for Neurodegenerative Diseases, University of California, San Francisco, San Francisco, CA 94158, USA; Helen and Robert Appel Alzheimer Disease Research Institute, Feil Family Brain and Mind Research Institute, Weill Cornell Medicine, New York, NY 10021, USA.; Bose RS; Institute for Neurodegenerative Diseases, University of California, San Francisco, San Francisco, CA 94158, USA.; Travaglini KJ; Allen Institute for Brain Science, Seattle, WA 98103, USA.; Lam VL; Department of Pharmaceutical Chemistry, University of California, San Francisco, San Francisco, CA 94158, USA.; Goodness D; Institute for Neurodegenerative Diseases, University of California, San Francisco, San Francisco, CA 94158, USA.; Ta T; Institute for Neurodegenerative Diseases, University of California, San Francisco, San Francisco, CA 94158, USA.; Dixon G; Institute for Neurodegenerative Diseases, University of California, San Francisco, San Francisco, CA 94158, USA.; Marzette E; Institute for Neurodegenerative Diseases, University of California, San Francisco, San Francisco, CA 94158, USA.; Jin J; Institute for Neurodegenerative Diseases, University of California, San Francisco, San Francisco, CA 94158, USA.; Tian R; Institute for Neurodegenerative Diseases, University of California, San Francisco, San Francisco, CA 94158, USA.; Tse E; Institute for Neurodegenerative Diseases, University of California, San Francisco, San Francisco, CA 94158, USA; Department of Biochemistry and Biophysics, University of California, San Francisco, San Francisco, CA 94158, USA.; Abskharon R; Departments of Chemistry and Biochemistry and Biological Chemistry, UCLA-DOE Institute, University of California, Los Angeles, Los Angeles, CA 90095, USA.; Pan HS; Institute for Neurodegenerative Diseases, University of California, San Francisco, San Francisco, CA 94158, USA; Department of Pharmaceutical Chemistry, University of California, San Francisco, San Francisco, CA 94158, USA.; Carroll EC; Institute for Neurodegenerative Diseases, University of California, San Francisco, San Francisco, CA 94158, USA; Department of Chemistry, San José State University, San José, CA 95192, USA.; Lawrence RE; Department of Biological Chemistry, University of California, Los Angeles, Los Angeles, CA 90095, USA; Quantitative Biosciences Institute (QBI), University of California, San Francisco, San Francisco, CA 94158, USA; Howard Hughes Medical Institute UCSF, San Francisco, CA 94158, USA.; Gestwicki JE; Institute for Neurodegenerative Diseases, University of California, San Francisco, San Francisco, CA 94158, USA; Department of Pharmaceutical Chemistry, University of California, San Francisco, San Francisco, CA 94158, USA.; Rexach JE; Department of Neurology, University of California, Los Angeles, Los Angeles, CA 90095, USA.; Eisenberg DS; Departments of Chemistry and Biochemistry and Biological Chemistry, UCLA-DOE Institute, University of California, Los Angeles, Los Angeles, CA 90095, USA; Howard Hughes Medical Institute UCLA, Los Angeles, CA 90095, USA.; Kanaan NM; Department of Translational Neuroscience, College of Human Medicine, Michigan State University, Grand Rapids, MI 49503, USA.; Southworth DR; Institute for Neurodegenerative Diseases, University of California, San Francisco, San Francisco, CA 94158, USA; Department of Biochemistry and Biophysics, University of California, San Francisco, San Francisco, CA 94158, USA.; Gross JD; Department of Pharmaceutical Chemistry, University of California, San Francisco, San Francisco, CA 94158, USA.; Gan L; Helen and Robert Appel Alzheimer Disease Research Institute, Feil Family Brain and Mind Research Institute, Weill Cornell Medicine, New York, NY 10021, USA.; Swaney DL; Quantitative Biosciences Institute (QBI), University of California, San Francisco, San Francisco, CA 94158, USA; Department of Bioengineering and Therapeutic Sciences, University of California, San Francisco, San Francisco, CA 94158, USA; Gladstone Institute of Data Science and Biotechnology, Gladstone Institutes, San Francisco, CA 94158, USA.; Kampmann M; Institute for Neurodegenerative Diseases, University of California, San Francisco, San Francisco, CA 94158, USA; Department of Biochemistry and Biophysics, University of California, San Francisco, San Francisco, CA 94158, USA. Electronic address: martin.kampmann@ucsf.edu.

Publisher: Cell Press Country of Publication: United States NLM ID: 0413066 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1097-4172 (Electronic) Linking ISSN: 00928674 NLM ISO Abbreviation: Cell Subsets: MEDLINE

Nellis MM; Department of Medicine, Emory University School of Medicine, Atlanta, GA, USA.; Luiz J; Department of Paediatrics and Child Health, and SA-MRC Unit On Child & Adolescent Health, University of Cape Town, Cape Town, South Africa.; Department of Paediatrics, Dora Nginza Hospital, Gqeberha, South Africa.; Jaganath D; University of California San Francisco School of Medicine, San Francisco, CA, USA.; Center for Tuberculosis, University of California San Francisco, Institute for Global Health Sciences, San Francisco, CA, USA.; Mousavian Z; Department of Global Health, Emory University Rollins School of Public Health, Atlanta, GA, USA.; Nkereuwem E; Medical Research Council Unit The Gambia at the London, School of Hygiene and Tropical Medicine, Banjul, Gambia.; Wambi P; Uganda Tuberculosis Implementation Research Consortium, Kampala, Uganda.; Calderon R; Advance Research and Health, Lima, Peru.; Paradkar M; Byramjee Jeejeebhoy Government Medical College-Johns Hopkins University Clinical Research Site, Pune, India.; Center for Infectious Diseases in India, Johns Hopkins India, Pune, India.; Castro R; University of California San Francisco School of Medicine, San Francisco, CA, USA.; Nerurkar R; University of California San Francisco School of Medicine, San Francisco, CA, USA.; Franke MF; Department of Global Health and Social Medicine, Harvard Medical School, Boston, MA, USA.; Kinikar A; Department of Pediatrics, Byramjee Jeejeebhoy Government Medical College and Sassoon General Hospitals, Pune, India.; Wobudeya E; Uganda Tuberculosis Implementation Research Consortium, Kampala, Uganda.; Zar HJ; Department of Paediatrics and Child Health, and SA-MRC Unit On Child & Adolescent Health, University of Cape Town, Cape Town, South Africa.; Jones DP; Department of Medicine, Emory University School of Medicine, Atlanta, GA, USA.; Segal M; University of California San Francisco School of Medicine, San Francisco, CA, USA.; Sigal G; Meso Scale Diagnostics, LLC., Rockville, MD, USA.; Swaney DL; J. David Gladstone Institutes, San Francisco, CA, USA.; Quantitative Biosciences Institute, University of California San Francisco, San Francisco, CA, USA.; Department of Bioengineering and Therapeutic Sciences, University of California San Francisco, San Francisco, CA, USA.; Cattamanchi A; Center for Tuberculosis, University of California San Francisco, Institute for Global Health Sciences, San Francisco, CA, USA.; Division of Pulmonary Diseases and Critical Care Medicine, University of California Irvine, Irvine, CA, USA.; Ernst JD; University of California San Francisco School of Medicine, San Francisco, CA, USA.; Ziegler TR; Department of Medicine, Emory University School of Medicine, Atlanta, GA, USA.; Kampmann B; Medical Research Council Unit The Gambia at the London, School of Hygiene and Tropical Medicine, Banjul, Gambia.; Charité Centre for Global Health, Charité - Universitätsmedizin Berlin, Berlin, Germany.; Collins JM; Department of Medicine, Emory University School of Medicine, Atlanta, GA, USA. jmcoll4@emory.edu.

Publisher: Nature Publishing Group Country of Publication: England NLM ID: 101563288 Publication Model: Electronic Cited Medium: Internet ISSN: 2045-2322 (Electronic) Linking ISSN: 20452322 NLM ISO Abbreviation: Sci Rep Subsets: MEDLINE

Taha TY; Gladstone Institutes, San Francisco, California, United States of America.; Department of Bioengineering and Therapeutic Sciences, University of California, San Francisco, California, United States of America.; Ezzatpour S; Department of Microbiology, College of Agriculture and Life Sciences, Cornell University, Ithaca, New York, United States of America.; Department of Microbiology and Immunology, Cornell University College of Veterinary Medicine, Ithaca, New York, United States of America.; Hayashi JM; Gladstone Institutes, San Francisco, California, United States of America.; Ye C; Texas Biomedical Research Institute, San Antonio, Texas, United States of America.; Zapatero-Belinchón FJ; Gladstone Institutes, San Francisco, California, United States of America.; Rosecrans JA; Gladstone Institutes, San Francisco, California, United States of America.; Kimmerly GR; Gladstone Institutes, San Francisco, California, United States of America.; Chen IP; Gladstone Institutes, San Francisco, California, United States of America.; Department of Medicine, University of California, San Francisco, California, United States of America.; Walcott K; Gladstone Institutes, San Francisco, California, United States of America.; Kurianowicz A; Gladstone Institutes, San Francisco, California, United States of America.; Jorgens DM; Electron Microscope Laboratory, University of California, Berkeley, California, United States of America.; Chaplin NR; Electron Microscope Laboratory, University of California, Berkeley, California, United States of America.; Choi A; Department of Microbiology and Immunology, Cornell University College of Veterinary Medicine, Ithaca, New York, United States of America.; Buchholz DW; Department of Microbiology and Immunology, Cornell University College of Veterinary Medicine, Ithaca, New York, United States of America.; Sahler J; Department of Microbiology and Immunology, Cornell University College of Veterinary Medicine, Ithaca, New York, United States of America.; Hilt ZT; Department of Microbiology and Immunology, Cornell University College of Veterinary Medicine, Ithaca, New York, United States of America.; Imbiakha B; Department of Microbiology and Immunology, Cornell University College of Veterinary Medicine, Ithaca, New York, United States of America.; Vagi-Szmola C; Gladstone Institutes, San Francisco, California, United States of America.; Montano M; Gladstone Institutes, San Francisco, California, United States of America.; Stevenson E; Gladstone Institutes, San Francisco, California, United States of America.; Department of Cellular and Molecular Pharmacology, University of California, San Francisco, California, United States of America.; Quantitative Biosciences Institute (QBI), University of California, San Francisco, California, United States of America.; Quantitative Biosciences Institute (QBI) COVID-19 Research Group (QCRG), San Francisco, California, United States of America.; Gordon M; Gladstone Institutes, San Francisco, California, United States of America.; Department of Cellular and Molecular Pharmacology, University of California, San Francisco, California, United States of America.; Quantitative Biosciences Institute (QBI), University of California, San Francisco, California, United States of America.; Quantitative Biosciences Institute (QBI) COVID-19 Research Group (QCRG), San Francisco, California, United States of America.; Swaney DL; Gladstone Institutes, San Francisco, California, United States of America.; Department of Cellular and Molecular Pharmacology, University of California, San Francisco, California, United States of America.; Quantitative Biosciences Institute (QBI), University of California, San Francisco, California, United States of America.; Quantitative Biosciences Institute (QBI) COVID-19 Research Group (QCRG), San Francisco, California, United States of America.; Krogan NJ; Gladstone Institutes, San Francisco, California, United States of America.; Department of Bioengineering and Therapeutic Sciences, University of California, San Francisco, California, United States of America.; Department of Cellular and Molecular Pharmacology, University of California, San Francisco, California, United States of America.; Quantitative Biosciences Institute (QBI), University of California, San Francisco, California, United States of America.; Quantitative Biosciences Institute (QBI) COVID-19 Research Group (QCRG), San Francisco, California, United States of America.; Whittaker GR; Department of Microbiology and Immunology, Cornell University College of Veterinary Medicine, Ithaca, New York, United States of America.; Martinez-Sobrido L; Texas Biomedical Research Institute, San Antonio, Texas, United States of America.; Aguilar HC; Department of Microbiology, College of Agriculture and Life Sciences, Cornell University, Ithaca, New York, United States of America.; Department of Microbiology and Immunology, Cornell University College of Veterinary Medicine, Ithaca, New York, United States of America.; Ott M; Gladstone Institutes, San Francisco, California, United States of America.; Department of Medicine, University of California, San Francisco, California, United States of America.; Chan Zuckerberg Biohub - San Francisco, San Francisco, California, United States of America.

Publisher: Public Library of Science Country of Publication: United States NLM ID: 101238921 Publication Model: eCollection Cited Medium: Internet ISSN: 1553-7374 (Electronic) Linking ISSN: 15537366 NLM ISO Abbreviation: PLoS Pathog Subsets: MEDLINE

Nakajo H; Department of Psychiatry and Behavioral Sciences/Weill Institute for Neurosciences, University of California, San Francisco, San Francisco, CA, USA.; Cao R; Department of Psychiatry and Behavioral Sciences/Weill Institute for Neurosciences, University of California, San Francisco, San Francisco, CA, USA.; Mula SA; Department of Psychiatry and Behavioral Sciences/Weill Institute for Neurosciences, University of California, San Francisco, San Francisco, CA, USA.; McKetney J; J. David Gladstone Institutes, San Francisco, CA, USA.; Quantitative Biosciences Institute (QBI), University of California, San Francisco, San Francisco, CA, USA.; Department of Cellular and Molecular Pharmacology, University of California, San Francisco, San Francisco, CA, USA.; Silva NJ; Department of Psychiatry and Behavioral Sciences/Weill Institute for Neurosciences, University of California, San Francisco, San Francisco, CA, USA.; Li KH; Department of Pharmaceutical Chemistry, University of California, San Francisco, San Francisco, CA, USA.; Chalkley RJ; Department of Pharmaceutical Chemistry, University of California, San Francisco, San Francisco, CA, USA.; Randolph LK; Department of Psychiatry and Behavioral Sciences/Weill Institute for Neurosciences, University of California, San Francisco, San Francisco, CA, USA.; Shah M; Department of Psychiatry and Behavioral Sciences/Weill Institute for Neurosciences, University of California, San Francisco, San Francisco, CA, USA.; Rose IVL; Institute for Neurodegenerative Diseases, Weill Institute for Neurosciences, University of California, San Francisco, San Francisco, CA, USA.; Neuroscience Graduate Program, University of California, San Francisco, San Francisco, CA, USA.; Kampmann M; Institute for Neurodegenerative Diseases, Weill Institute for Neurosciences, University of California, San Francisco, San Francisco, CA, USA.; Department of Biochemistry and Biophysics, University of California, San Francisco, San Francisco, CA, USA.; Swaney DL; J. David Gladstone Institutes, San Francisco, CA, USA.; Quantitative Biosciences Institute (QBI), University of California, San Francisco, San Francisco, CA, USA.; Department of Cellular and Molecular Pharmacology, University of California, San Francisco, San Francisco, CA, USA.; Kirst C; Neuroscience Graduate Program, University of California, San Francisco, San Francisco, CA, USA.; Department of Anatomy, University of California, San Francisco, San Francisco, CA, USA.; Data & Computational Science Department, Scientific Data Division, Computing Sciences Area, Lawrence Berkeley National Laboratory, Berkeley, CA, USA.; Kavli Institute for Fundamental Neuroscience, University of California, San Francisco, San Francisco, CA, USA.; Molofsky AV; Department of Psychiatry and Behavioral Sciences/Weill Institute for Neurosciences, University of California, San Francisco, San Francisco, CA, USA. anna.molofsky@ucsf.edu.; Kavli Institute for Fundamental Neuroscience, University of California, San Francisco, San Francisco, CA, USA. anna.molofsky@ucsf.edu.

Publisher: Nature Publishing Group Country of Publication: United States NLM ID: 9809671 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1546-1726 (Electronic) Linking ISSN: 10976256 NLM ISO Abbreviation: Nat Neurosci Subsets: MEDLINE

Moen JM; Richards AL; Krogsaeter EK; Polacco B; Gordon M; Stevenson E; Boyles R; Burq M; Stepec D; Crampton B; Cimermancic P; Rosenthal JJC; Krogan NJ; Swaney DL

Country of Publication: United States NLM ID: 101680187 Publication Model: Electronic Cited Medium: Internet ISSN: 2692-8205 (Electronic) Linking ISSN: 26928205 NLM ISO Abbreviation: bioRxiv Subsets: PubMed not MEDLINE

Mohammed AM; West African Centre for Cell Biology of Infectious, Pathogens (WACCBIP), College of Basic and Applied Sciences, University of Ghana, Accra, Ghana.; Biochemistry, Cell and Molecular Biology, College of Basic and Applied Sciences, University of Ghana, Accra, Ghana.; Olwal CO; West African Centre for Cell Biology of Infectious, Pathogens (WACCBIP), College of Basic and Applied Sciences, University of Ghana, Accra, Ghana.; Biochemistry, Cell and Molecular Biology, College of Basic and Applied Sciences, University of Ghana, Accra, Ghana.; Fossati A; The J. David Gladstone Institute of Data Science and Biotechnology, San Francisco, CA, USA.; Quantitative Biosciences Institute, University of California, San Francisco, CA, USA.; Department of Bioengineering and Therapeutic Sciences, University of California, San Francisco, CA, USA.; Nyakoe NK; West African Centre for Cell Biology of Infectious, Pathogens (WACCBIP), College of Basic and Applied Sciences, University of Ghana, Accra, Ghana.; Biochemistry, Cell and Molecular Biology, College of Basic and Applied Sciences, University of Ghana, Accra, Ghana.; Fabius JM; The J. David Gladstone Institute of Data Science and Biotechnology, San Francisco, CA, USA.; Quantitative Biosciences Institute, University of California, San Francisco, CA, USA.; Department of Bioengineering and Therapeutic Sciences, University of California, San Francisco, CA, USA.; Gordon M; Quantitative Biosciences Institute, University of California, San Francisco, CA, USA.; Department of Bioengineering and Therapeutic Sciences, University of California, San Francisco, CA, USA.; Polacco BJ; Quantitative Biosciences Institute, University of California, San Francisco, CA, USA.; Department of Bioengineering and Therapeutic Sciences, University of California, San Francisco, CA, USA.; Swaney DL; The J. David Gladstone Institute of Data Science and Biotechnology, San Francisco, CA, USA. danielle.swaney@ucsf.edu.; Quantitative Biosciences Institute, University of California, San Francisco, CA, USA. danielle.swaney@ucsf.edu.; Department of Bioengineering and Therapeutic Sciences, University of California, San Francisco, CA, USA. danielle.swaney@ucsf.edu.; Awandare GA; West African Centre for Cell Biology of Infectious, Pathogens (WACCBIP), College of Basic and Applied Sciences, University of Ghana, Accra, Ghana. gawandare@ug.edu.gh.; Biochemistry, Cell and Molecular Biology, College of Basic and Applied Sciences, University of Ghana, Accra, Ghana. gawandare@ug.edu.gh.; Krogan NJ; The J. David Gladstone Institute of Data Science and Biotechnology, San Francisco, CA, USA. nevan.krogan@ucsf.edu.; Quantitative Biosciences Institute, University of California, San Francisco, CA, USA. nevan.krogan@ucsf.edu.; Department of Bioengineering and Therapeutic Sciences, University of California, San Francisco, CA, USA. nevan.krogan@ucsf.edu.; Bouhaddou M; Institute for Quantitative and Computational Biosciences (QCBio), University of California, Los Angeles, LA, USA. bouhaddou@ucla.edu.; Department of Microbiology, Immunology, and Molecular Genetics (MIMG), University of California, Los Angeles, LA, USA. bouhaddou@ucla.edu.; Molecular Biology Institute, University of California, Los Angeles, LA, USA. bouhaddou@ucla.edu.; Bediako Y; West African Centre for Cell Biology of Infectious, Pathogens (WACCBIP), College of Basic and Applied Sciences, University of Ghana, Accra, Ghana. ybediako@ug.edu.gh.; Yemaachi Biotech, Accra, Ghana. ybediako@ug.edu.gh.

Publisher: BioMed Central Country of Publication: England NLM ID: 100968551 Publication Model: Electronic Cited Medium: Internet ISSN: 1471-2334 (Electronic) Linking ISSN: 14712334 NLM ISO Abbreviation: BMC Infect Dis Subsets: MEDLINE

Pessina P; Stem Cells and Regenerative Medicine Center, Baylor College of Medicine, Houston, TX, USA.; Center for Cell and Gene Therapy, Baylor College of Medicine, Houston, TX, USA.; Department of Molecular and Cellular Biology, Baylor College of Medicine, Houston, TX, USA.; Dan L. Duncan Comprehensive Cancer Center, Baylor College of Medicine, Houston, TX, USA.; Nevo M; Department of Molecular, Cellular and Developmental Biology, University of Colorado Boulder, Boulder, CO, USA.; University of Colorado Cancer Center, Anschutz Medical Campus, Aurora, CO, USA.; Charles C. Gates Center for Regenerative Medicine, University of Colorado Anschutz Medical Campus, Aurora, CO, USA.; Shi J; Molecular Medicine Program, Division of Urology, Department of Surgery, University of Utah School of Medicine, Salt Lake City, UT, USA.; Kodali S; Stem Cells and Regenerative Medicine Center, Baylor College of Medicine, Houston, TX, USA.; Center for Cell and Gene Therapy, Baylor College of Medicine, Houston, TX, USA.; Department of Molecular and Cellular Biology, Baylor College of Medicine, Houston, TX, USA.; Dan L. Duncan Comprehensive Cancer Center, Baylor College of Medicine, Houston, TX, USA.; Casas E; Department of Molecular, Cellular and Developmental Biology, University of Colorado Boulder, Boulder, CO, USA.; University of Colorado Cancer Center, Anschutz Medical Campus, Aurora, CO, USA.; Charles C. Gates Center for Regenerative Medicine, University of Colorado Anschutz Medical Campus, Aurora, CO, USA.; Cui Y; Stem Cells and Regenerative Medicine Center, Baylor College of Medicine, Houston, TX, USA.; Center for Cell and Gene Therapy, Baylor College of Medicine, Houston, TX, USA.; Department of Molecular and Cellular Biology, Baylor College of Medicine, Houston, TX, USA.; Dan L. Duncan Comprehensive Cancer Center, Baylor College of Medicine, Houston, TX, USA.; Richards AL; J. David Gladstone Institutes, San Francisco, CA, USA.; Quantitative Biosciences Institute, University of California San Francisco, San Francisco, CA, USA.; Department of Bioengineering and Therapeutic Sciences, University of California San Francisco, San Francisco, CA, USA.; Park EJ; Stem Cells and Regenerative Medicine Center, Baylor College of Medicine, Houston, TX, USA.; Center for Cell and Gene Therapy, Baylor College of Medicine, Houston, TX, USA.; Department of Molecular and Cellular Biology, Baylor College of Medicine, Houston, TX, USA.; Dan L. Duncan Comprehensive Cancer Center, Baylor College of Medicine, Houston, TX, USA.; Chen X; Department of Stem Cell Biology and Regenerative Medicine, Keck School of Medicine, University of Southern California, Los Angeles, CA, USA.; Levin-Ferreyra F; Stem Cells and Regenerative Medicine Center, Baylor College of Medicine, Houston, TX, USA.; Center for Cell and Gene Therapy, Baylor College of Medicine, Houston, TX, USA.; Department of Molecular and Cellular Biology, Baylor College of Medicine, Houston, TX, USA.; Dan L. Duncan Comprehensive Cancer Center, Baylor College of Medicine, Houston, TX, USA.; Rivera Tostado A; Stem Cells and Regenerative Medicine Center, Baylor College of Medicine, Houston, TX, USA.; Center for Cell and Gene Therapy, Baylor College of Medicine, Houston, TX, USA.; Department of Molecular and Cellular Biology, Baylor College of Medicine, Houston, TX, USA.; Dan L. Duncan Comprehensive Cancer Center, Baylor College of Medicine, Houston, TX, USA.; Stevenson E; J. David Gladstone Institutes, San Francisco, CA, USA.; Quantitative Biosciences Institute, University of California San Francisco, San Francisco, CA, USA.; Department of Bioengineering and Therapeutic Sciences, University of California San Francisco, San Francisco, CA, USA.; Krogan NJ; J. David Gladstone Institutes, San Francisco, CA, USA.; Quantitative Biosciences Institute, University of California San Francisco, San Francisco, CA, USA.; Department of Bioengineering and Therapeutic Sciences, University of California San Francisco, San Francisco, CA, USA.; Swaney DL; J. David Gladstone Institutes, San Francisco, CA, USA.; Quantitative Biosciences Institute, University of California San Francisco, San Francisco, CA, USA.; Department of Bioengineering and Therapeutic Sciences, University of California San Francisco, San Francisco, CA, USA.; Ying Q; Department of Stem Cell Biology and Regenerative Medicine, Keck School of Medicine, University of Southern California, Los Angeles, CA, USA.; Chen Q; Molecular Medicine Program, Division of Urology, Department of Surgery, University of Utah School of Medicine, Salt Lake City, UT, USA.; Brumbaugh J; Department of Molecular, Cellular and Developmental Biology, University of Colorado Boulder, Boulder, CO, USA. justin.brumbaugh@colorado.edu.; University of Colorado Cancer Center, Anschutz Medical Campus, Aurora, CO, USA. justin.brumbaugh@colorado.edu.; Charles C. Gates Center for Regenerative Medicine, University of Colorado Anschutz Medical Campus, Aurora, CO, USA. justin.brumbaugh@colorado.edu.; BioFrontiers Institute, University of Colorado, Boulder, CO, USA. justin.brumbaugh@colorado.edu.; Di Stefano B; Stem Cells and Regenerative Medicine Center, Baylor College of Medicine, Houston, TX, USA. bruno.distefano@bcm.edu.; Center for Cell and Gene Therapy, Baylor College of Medicine, Houston, TX, USA. bruno.distefano@bcm.edu.; Department of Molecular and Cellular Biology, Baylor College of Medicine, Houston, TX, USA. bruno.distefano@bcm.edu.; Dan L. Duncan Comprehensive Cancer Center, Baylor College of Medicine, Houston, TX, USA. bruno.distefano@bcm.edu.

Publisher: Nature America Publishing Country of Publication: United States NLM ID: 9604648 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1546-1696 (Electronic) Linking ISSN: 10870156 NLM ISO Abbreviation: Nat Biotechnol Subsets: MEDLINE

Shriver LP; Department of Chemistry, Washington University in Saint Louis, Saint Louis, MO 63130, USA.; Center for Mass Spectrometry and Metabolic Tracing, Washington University in Saint Louis, Saint Louis, MO 63130, USA.; Department of Medicine, Washington University in Saint Louis, Saint Louis, MO 63130, USA.; Polacco BJ; Quantitative Biosciences Institute (QBI), University of California, San Francisco, San Francisco, CA 94158, USA.; Department of Cellular and Molecular Pharmacology, University of California, San Francisco, San Francisco, CA 94158, USA.; Gladstone Institute of Data Science and Biotechnology, J. David Gladstone Institutes, San Francisco, CA 94158, USA.; Eckhardt M; Quantitative Biosciences Institute (QBI), University of California, San Francisco, San Francisco, CA 94158, USA.; Department of Cellular and Molecular Pharmacology, University of California, San Francisco, San Francisco, CA 94158, USA.; Gladstone Institute of Data Science and Biotechnology, J. David Gladstone Institutes, San Francisco, CA 94158, USA.; Chang MW; Department of Medicine, University of California, San Diego, La Jolla, CA 90293, USA.; Martínez-Romero C; Department of Microbiology, Icahn School of Medicine at Mount Sinai, New York, NY 10029, USA.; Global Health & Emerging Pathogens Institute, Icahn School of Medicine at Mount Sinai, New York, NY 10029, USA.; Adkins-Travis K; Department of Chemistry, Washington University in Saint Louis, Saint Louis, MO 63130, USA.; Center for Mass Spectrometry and Metabolic Tracing, Washington University in Saint Louis, Saint Louis, MO 63130, USA.; Department of Medicine, Washington University in Saint Louis, Saint Louis, MO 63130, USA.; Cahalane C; Department of Chemistry and Biochemistry, Oberlin College, Oberlin, OH 44074, USA.; Haas K; Quantitative Biosciences Institute (QBI), University of California, San Francisco, San Francisco, CA 94158, USA.; Department of Cellular and Molecular Pharmacology, University of California, San Francisco, San Francisco, CA 94158, USA.; Gladstone Institute of Data Science and Biotechnology, J. David Gladstone Institutes, San Francisco, CA 94158, USA.; Stein DA; Department of Biomedical Sciences, Carlson College of Veterinary Medicine, Oregon State University, Corvallis, OR 97331, USA.; Fourati S; Department of Pathology, Emory University, Atlanta, GA 30322, USA.; Martin-Sancho L; Department of Immunology and Microbiology, The Scripps Research Institute, La Jolla, CA 92037, USA.; Metreveli G; Department of Microbiology, Icahn School of Medicine at Mount Sinai, New York, NY 10029, USA.; Global Health & Emerging Pathogens Institute, Icahn School of Medicine at Mount Sinai, New York, NY 10029, USA.; Johnson JR; Quantitative Biosciences Institute (QBI), University of California, San Francisco, San Francisco, CA 94158, USA.; Department of Cellular and Molecular Pharmacology, University of California, San Francisco, San Francisco, CA 94158, USA.; Gladstone Institute of Data Science and Biotechnology, J. David Gladstone Institutes, San Francisco, CA 94158, USA.; Department of Microbiology, Icahn School of Medicine at Mount Sinai, New York, NY 10029, USA.; Muñoz-Moreno R; Department of Microbiology, Icahn School of Medicine at Mount Sinai, New York, NY 10029, USA.; Global Health & Emerging Pathogens Institute, Icahn School of Medicine at Mount Sinai, New York, NY 10029, USA.; Newton BW; Department of Cellular and Molecular Pharmacology, University of California, San Francisco, San Francisco, CA 94158, USA.; Gladstone Institute of Data Science and Biotechnology, J. David Gladstone Institutes, San Francisco, CA 94158, USA.; Kaake RM; Quantitative Biosciences Institute (QBI), University of California, San Francisco, San Francisco, CA 94158, USA.; Department of Cellular and Molecular Pharmacology, University of California, San Francisco, San Francisco, CA 94158, USA.; Gladstone Institute of Data Science and Biotechnology, J. David Gladstone Institutes, San Francisco, CA 94158, USA.; Zhou Y; Quantitative Biosciences Institute (QBI), University of California, San Francisco, San Francisco, CA 94158, USA.; Department of Cellular and Molecular Pharmacology, University of California, San Francisco, San Francisco, CA 94158, USA.; Gladstone Institute of Data Science and Biotechnology, J. David Gladstone Institutes, San Francisco, CA 94158, USA.; Jimenez-Morales D; Quantitative Biosciences Institute (QBI), University of California, San Francisco, San Francisco, CA 94158, USA.; Department of Cellular and Molecular Pharmacology, University of California, San Francisco, San Francisco, CA 94158, USA.; Gladstone Institute of Data Science and Biotechnology, J. David Gladstone Institutes, San Francisco, CA 94158, USA.; VonDollen J; Quantitative Biosciences Institute (QBI), University of California, San Francisco, San Francisco, CA 94158, USA.; Department of Cellular and Molecular Pharmacology, University of California, San Francisco, San Francisco, CA 94158, USA.; Gladstone Institute of Data Science and Biotechnology, J. David Gladstone Institutes, San Francisco, CA 94158, USA.; Verschueren E; Department of Cellular and Molecular Pharmacology, University of California, San Francisco, San Francisco, CA 94158, USA.; Gladstone Institute of Data Science and Biotechnology, J. David Gladstone Institutes, San Francisco, CA 94158, USA.; Swaney DL; Quantitative Biosciences Institute (QBI), University of California, San Francisco, San Francisco, CA 94158, USA.; Department of Cellular and Molecular Pharmacology, University of California, San Francisco, San Francisco, CA 94158, USA.; Gladstone Institute of Data Science and Biotechnology, J. David Gladstone Institutes, San Francisco, CA 94158, USA.; Department of Bioengineering and Therapeutic Sciences, University of California, San Francisco, San Francisco, CA 94158, USA.; Nguyen TT; Quantitative Biosciences Institute (QBI), University of California, San Francisco, San Francisco, CA 94158, USA.; Department of Cellular and Molecular Pharmacology, University of California, San Francisco, San Francisco, CA 94158, USA.; Gladstone Institute of Data Science and Biotechnology, J. David Gladstone Institutes, San Francisco, CA 94158, USA.; Stevenson EJ; Quantitative Biosciences Institute (QBI), University of California, San Francisco, San Francisco, CA 94158, USA.; Department of Cellular and Molecular Pharmacology, University of California, San Francisco, San Francisco, CA 94158, USA.; Gladstone Institute of Data Science and Biotechnology, J. David Gladstone Institutes, San Francisco, CA 94158, USA.; Stancliffe E; Department of Chemistry, Washington University in Saint Louis, Saint Louis, MO 63130, USA.; Center for Mass Spectrometry and Metabolic Tracing, Washington University in Saint Louis, Saint Louis, MO 63130, USA.; Department of Medicine, Washington University in Saint Louis, Saint Louis, MO 63130, USA.; Patti GJ; Department of Chemistry, Washington University in Saint Louis, Saint Louis, MO 63130, USA.; Center for Mass Spectrometry and Metabolic Tracing, Washington University in Saint Louis, Saint Louis, MO 63130, USA.; Department of Medicine, Washington University in Saint Louis, Saint Louis, MO 63130, USA.; Albrecht R; Department of Microbiology, Icahn School of Medicine at Mount Sinai, New York, NY 10029, USA.; Global Health & Emerging Pathogens Institute, Icahn School of Medicine at Mount Sinai, New York, NY 10029, USA.; Moulton HM; Department of Biomedical Sciences, Carlson College of Veterinary Medicine, Oregon State University, Corvallis, OR 97331, USA.; Pache L; Infectious and Inflammatory Disease Center, Immunity and Pathogenesis Program, Sanford Burnham Prebys Medical Discovery Institute, La Jolla, CA 92037, USA.; Sekaly RP; Department of Pathology, Emory University, Atlanta, GA 30322, USA.; Benner C; Department of Medicine, University of California, San Diego, La Jolla, CA 90293, USA.; Hultquist JF; Quantitative Biosciences Institute (QBI), University of California, San Francisco, San Francisco, CA 94158, USA.; Department of Cellular and Molecular Pharmacology, University of California, San Francisco, San Francisco, CA 94158, USA.; Gladstone Institute of Data Science and Biotechnology, J. David Gladstone Institutes, San Francisco, CA 94158, USA.; Chanda SK; Infectious and Inflammatory Disease Center, Immunity and Pathogenesis Program, Sanford Burnham Prebys Medical Discovery Institute, La Jolla, CA 92037, USA.; Department of Immunology and Microbiology, The Scripps Research Institute, La Jolla, CA 92037, USA.; Garcia-Sastre A; Department of Microbiology, Icahn School of Medicine at Mount Sinai, New York, NY 10029, USA.; Global Health & Emerging Pathogens Institute, Icahn School of Medicine at Mount Sinai, New York, NY 10029, USA.; Department of Medicine, Division of Infectious Diseases, Icahn School of Medicine at Mount Sinai, New York, NY 10029, USA.; The Tisch Cancer Institute, Icahn School of Medicine at Mount Sinai, New York, NY 10029, USA.; Department of Pathology, Molecular and Cell-Based Medicine, Icahn School of Medicine at Mount Sinai, New York, NY 10029, USA.; Krogan NJ; Quantitative Biosciences Institute (QBI), University of California, San Francisco, San Francisco, CA 94158, USA.; Department of Cellular and Molecular Pharmacology, University of California, San Francisco, San Francisco, CA 94158, USA.; Gladstone Institute of Data Science and Biotechnology, J. David Gladstone Institutes, San Francisco, CA 94158, USA.; Department of Bioengineering and Therapeutic Sciences, University of California, San Francisco, San Francisco, CA 94158, USA.

Publisher: Cell Press Country of Publication: United States NLM ID: 101724038 Publication Model: eCollection Cited Medium: Internet ISSN: 2589-0042 (Electronic) Linking ISSN: 25890042 NLM ISO Abbreviation: iScience Subsets: PubMed not MEDLINE

Mohl GA; Institute for Neurodegenerative Diseases, University of California San Francisco, San Francisco, CA, USA.; Department of Neurology, University of California San Francisco, San Francisco, CA, USA.; Dixon G; Institute for Neurodegenerative Diseases, University of California San Francisco, San Francisco, CA, USA.; Marzette E; Institute for Neurodegenerative Diseases, University of California San Francisco, San Francisco, CA, USA.; McKetney J; Gladstone Data Science and Biotechnology Institute, The J. David Gladstone Institutes, San Francisco, CA, USA.; Quantitative Bioscience Institute, University of California San Francisco, San Francisco, CA, USA.; Department of Cellular and Molecular Pharmacology, University of California San Francisco, San Francisco, CA, USA.; Samelson AJ; Institute for Neurodegenerative Diseases, University of California San Francisco, San Francisco, CA, USA.; Serras CP; Institute for Neurodegenerative Diseases, University of California San Francisco, San Francisco, CA, USA.; Bakar Computational Health Sciences Institute, University of California San Francisco, San Francisco, CA USA.; Jin J; Institute for Neurodegenerative Diseases, University of California San Francisco, San Francisco, CA, USA.; Ariqat N; Institute for Neurodegenerative Diseases, University of California San Francisco, San Francisco, CA, USA.; Li A; Institute for Neurodegenerative Diseases, University of California San Francisco, San Francisco, CA, USA.; Boggess SC; Institute for Neurodegenerative Diseases, University of California San Francisco, San Francisco, CA, USA.; Swaney DL; Gladstone Data Science and Biotechnology Institute, The J. David Gladstone Institutes, San Francisco, CA, USA.; Quantitative Bioscience Institute, University of California San Francisco, San Francisco, CA, USA.; Department of Cellular and Molecular Pharmacology, University of California San Francisco, San Francisco, CA, USA.; Kampmann M; Institute for Neurodegenerative Diseases, University of California San Francisco, San Francisco, CA, USA.; Department of Biochemistry and Biophysics, University of California San Francisco, San Francisco, CA, USA.

Country of Publication: United States NLM ID: 101680187 Publication Model: Electronic Cited Medium: Internet ISSN: 2692-8205 (Electronic) Linking ISSN: 26928205 NLM ISO Abbreviation: bioRxiv Subsets: PubMed not MEDLINE

Eaton CD; Department of Radiation Oncology, University of California San Francisco, San Francisco, CA, USA.; Department of Neurological Surgery, University of California San Francisco, San Francisco, CA, USA.; Department of Pathology, University of California San Francisco, San Francisco, CA, USA.; Avalos L; Department of Neurological Surgery, University of California San Francisco, San Francisco, CA, USA.; Department of Radiology and Biomedical Imaging, University of California San Francisco, San Francisco, CA, USA.; Liu SJ; Department of Radiation Oncology, University of California San Francisco, San Francisco, CA, USA.; Department of Neurological Surgery, University of California San Francisco, San Francisco, CA, USA.; Department of Pathology, University of California San Francisco, San Francisco, CA, USA.; Chen Z; Department of Radiation Oncology, University of California San Francisco, San Francisco, CA, USA.; Department of Neurological Surgery, University of California San Francisco, San Francisco, CA, USA.; Department of Pathology, University of California San Francisco, San Francisco, CA, USA.; Zakimi N; Department of Radiation Oncology, University of California San Francisco, San Francisco, CA, USA.; Department of Neurological Surgery, University of California San Francisco, San Francisco, CA, USA.; Department of Pathology, University of California San Francisco, San Francisco, CA, USA.; Casey-Clyde T; Department of Radiation Oncology, University of California San Francisco, San Francisco, CA, USA.; Department of Neurological Surgery, University of California San Francisco, San Francisco, CA, USA.; Department of Pathology, University of California San Francisco, San Francisco, CA, USA.; Bisignano P; Department of Molecular Physiology and Biophysics, Vanderbilt University, Nashville, TN, USA.; Lucas CG; Department of Pathology, Johns Hopkins University, Baltimore, MD, USA.; Stevenson E; J. David Gladstone Institutes, California Institute for Quantitative Biosciences, San Francisco, CA, USA.; Department of Cellular and Molecular Pharmacology, University of California San Francisco, San Francisco, CA, USA.; Choudhury A; Department of Radiation Oncology, University of California San Francisco, San Francisco, CA, USA.; Department of Neurological Surgery, University of California San Francisco, San Francisco, CA, USA.; Department of Pathology, University of California San Francisco, San Francisco, CA, USA.; Vasudevan HN; Department of Radiation Oncology, University of California San Francisco, San Francisco, CA, USA.; Department of Neurological Surgery, University of California San Francisco, San Francisco, CA, USA.; Magill ST; Department of Neurological Surgery, Northwestern University, Chicago, IL, USA.; Young JS; Department of Radiation Oncology, University of California San Francisco, San Francisco, CA, USA.; Department of Neurological Surgery, University of California San Francisco, San Francisco, CA, USA.; Department of Pathology, University of California San Francisco, San Francisco, CA, USA.; Krogan NJ; J. David Gladstone Institutes, California Institute for Quantitative Biosciences, San Francisco, CA, USA.; Department of Cellular and Molecular Pharmacology, University of California San Francisco, San Francisco, CA, USA.; Villanueva-Meyer JE; Department of Neurological Surgery, University of California San Francisco, San Francisco, CA, USA.; Department of Radiology and Biomedical Imaging, University of California San Francisco, San Francisco, CA, USA.; Swaney DL; J. David Gladstone Institutes, California Institute for Quantitative Biosciences, San Francisco, CA, USA.; Department of Cellular and Molecular Pharmacology, University of California San Francisco, San Francisco, CA, USA.; Raleigh DR; Department of Radiation Oncology, University of California San Francisco, San Francisco, CA, USA. david.raleigh@ucsf.edu.; Department of Neurological Surgery, University of California San Francisco, San Francisco, CA, USA. david.raleigh@ucsf.edu.; Department of Pathology, University of California San Francisco, San Francisco, CA, USA. david.raleigh@ucsf.edu.

Publisher: Nature Pub. Group Country of Publication: England NLM ID: 101528555 Publication Model: Electronic Cited Medium: Internet ISSN: 2041-1723 (Electronic) Linking ISSN: 20411723 NLM ISO Abbreviation: Nat Commun Subsets: MEDLINE

Lin Z; Department of Pharmaceutical Chemistry, University of California, San Francisco, San Francisco, CA 94158, USA.; Schaefer K; Department of Pharmaceutical Chemistry, University of California, San Francisco, San Francisco, CA 94158, USA.; Lui I; Department of Pharmaceutical Chemistry, University of California, San Francisco, San Francisco, CA 94158, USA.; Yao Z; Department of Pharmaceutical Chemistry, University of California, San Francisco, San Francisco, CA 94158, USA.; Fossati A; Department of Cellular and Molecular Pharmacology, University of California, San Francisco, San Francisco, CA 94158, USA.; Quantitative Biosciences Institute, University of California, San Francisco, San Francisco, CA 94158, USA.; J. David Gladstone Institute of Data Science and Biotechnology, Gladstone Institutes, San Francisco, CA 94158, USA.; Swaney DL; Department of Cellular and Molecular Pharmacology, University of California, San Francisco, San Francisco, CA 94158, USA.; Quantitative Biosciences Institute, University of California, San Francisco, San Francisco, CA 94158, USA.; J. David Gladstone Institute of Data Science and Biotechnology, Gladstone Institutes, San Francisco, CA 94158, USA.; Palar A; Department of Pharmaceutical Chemistry, University of California, San Francisco, San Francisco, CA 94158, USA.; Quantitative Biosciences Institute, University of California, San Francisco, San Francisco, CA 94158, USA.; Department of Bioengineering and Therapeutic Sciences, University of California, San Francisco, San Francisco, CA 94158, USA.; Sali A; Department of Pharmaceutical Chemistry, University of California, San Francisco, San Francisco, CA 94158, USA.; Quantitative Biosciences Institute, University of California, San Francisco, San Francisco, CA 94158, USA.; Department of Bioengineering and Therapeutic Sciences, University of California, San Francisco, San Francisco, CA 94158, USA.; Wells JA; Department of Pharmaceutical Chemistry, University of California, San Francisco, San Francisco, CA 94158, USA.; Department of Cellular and Molecular Pharmacology, University of California, San Francisco, San Francisco, CA 94158, USA.

Publisher: American Association for the Advancement of Science Country of Publication: United States NLM ID: 0404511 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1095-9203 (Electronic) Linking ISSN: 00368075 NLM ISO Abbreviation: Science Subsets: MEDLINE

Felipe CS; Department of Bioengineering and Therapeutic Sciences, University of Caliafornia San Francisco, San Francisco, CA 94158.; Batra J; Quantitative Biosciences Institute, University of California San Francisco, San Francisco, CA 94158.; Gladstone Institute of Data Science and Biotechnology, J. David Gladstone Institutes, San Francisco, 94158, California,USA.; Department of Cellular and Molecular Pharmacology,University of California San Francisco, San Francisco, CA 94158.; Muralidharaan M; Quantitative Biosciences Institute, University of California San Francisco, San Francisco, CA 94158.; Gladstone Institute of Data Science and Biotechnology, J. David Gladstone Institutes, San Francisco, 94158, California,USA.; Department of Cellular and Molecular Pharmacology,University of California San Francisco, San Francisco, CA 94158.; Malpotra S; Quantitative Biosciences Institute, University of California San Francisco, San Francisco, CA 94158.; Gladstone Institute of Data Science and Biotechnology, J. David Gladstone Institutes, San Francisco, 94158, California,USA.; Department of Cellular and Molecular Pharmacology,University of California San Francisco, San Francisco, CA 94158.; Anand D; Quantitative Biosciences Institute, University of California San Francisco, San Francisco, CA 94158.; Gladstone Institute of Data Science and Biotechnology, J. David Gladstone Institutes, San Francisco, 94158, California,USA.; Department of Cellular and Molecular Pharmacology,University of California San Francisco, San Francisco, CA 94158.; Bauer R; Quantitative Biosciences Institute, University of California San Francisco, San Francisco, CA 94158.; Department of Cellular and Molecular Pharmacology,University of California San Francisco, San Francisco, CA 94158.; Verba KA; Quantitative Biosciences Institute, University of California San Francisco, San Francisco, CA 94158.; Department of Cellular and Molecular Pharmacology,University of California San Francisco, San Francisco, CA 94158.; Swaney DL; Quantitative Biosciences Institute, University of California San Francisco, San Francisco, CA 94158.; Gladstone Institute of Data Science and Biotechnology, J. David Gladstone Institutes, San Francisco, 94158, California,USA.; Department of Cellular and Molecular Pharmacology,University of California San Francisco, San Francisco, CA 94158.; Krogan NJ; Quantitative Biosciences Institute, University of California San Francisco, San Francisco, CA 94158.; Gladstone Institute of Data Science and Biotechnology, J. David Gladstone Institutes, San Francisco, 94158, California,USA.; Department of Cellular and Molecular Pharmacology,University of California San Francisco, San Francisco, CA 94158.; Grabe M; Department of Pharmaceutical Chemistry, University of California San Francisco, San Francisco, CA 94158.; Fraser JS; Department of Bioengineering and Therapeutic Sciences, University of Caliafornia San Francisco, San Francisco, CA 94158.; Quantitative Biosciences Institute, University of California San Francisco, San Francisco, CA 94158.

Country of Publication: United States NLM ID: 101680187 Publication Model: Electronic Cited Medium: Internet ISSN: 2692-8205 (Electronic) Linking ISSN: 26928205 NLM ISO Abbreviation: bioRxiv Subsets: PubMed not MEDLINE

Nellis MM; Emory University School of Medicine.; Luiz J; University of Cape Town.; Jaganath D; University of California San Francisco School of Medicine.; Mousavian Z; Emory University Rollins School of Public Health.; Nkereuwem E; MRC Unit the Gambia.; Wambi P; Uganda Tuberculosis Implementation Research Consortium.; Calderon R; Advance Research and Health.; Paradkar M; Byramjee Jeejeebhoy Government Medical College-Johns Hopkins University Clinical Research Site.; Castro R; University of California San Francisco School of Medicine.; Nerurkar R; University of California San Francisco School of Medicine.; Franke MF; Harvard Medical School.; Kinikar A; Byramjee Jeejeebhoy Government Medical College and Sassoon General Hospitals.; Wobudeya E; Uganda Tuberculosis Implementation Research Consortium.; Zar HJ; University of Cape Town.; Segal M; University of California San Francisco School of Medicine.; Sigal G; Meso Scale Diagnostics, LLC.; Swaney DL; J. David Gladstone Institutes.; Cattamanchi A; University of California Irvine.; Ernst JD; University of California San Francisco School of Medicine.; Ziegler TR; Emory University School of Medicine.; Kampmann B; MRC Unit the Gambia.; Collins JM; Emory University School of Medicine.

Country of Publication: United States NLM ID: 101768035 Publication Model: Electronic Cited Medium: Internet ISSN: 2693-5015 (Electronic) Linking ISSN: 26935015 NLM ISO Abbreviation: Res Sq Subsets: PubMed not MEDLINE

Batra J; Rutkowska M; Zhou Y; Ye C; Adavikolanu R; Young JM; Anand D; Verma S; Gordon M; Malpotra S; Cupic A; Kehrer T; Moen JM; Winters DM; Rojc A; Mena I; Aslam S; Martinez-Romero C; Conde Viñas I; Khalil Z; Farrugia K; Banerjee A; Tussia-Cohen D; Santos MD; Maji S; Muralidharan M; Foussard H; Chen IP; Fuchs R; Felipe CS; Zuliani-Alvarez L; Choudhury P; Obernier K; Gracias S; Suryawanshi R; Ibáñez C; Juste J; Pache L; Taha TY; Jouvenet N; Verba KA; Fraser JS; Demeret C; Stroud RM; van Bakel H; Ott M; Hagai T; Polacco B; Swaney DL; Echeverria I; Bouhaddou M; Eckhardt M; Malik HS; Martinez-Sobrido L; Miorin L; García-Sastre A; Krogan NJ

Country of Publication: United States NLM ID: 101680187 Publication Model: Electronic Cited Medium: Internet ISSN: 2692-8205 (Electronic) Linking ISSN: 26928205 NLM ISO Abbreviation: bioRxiv Subsets: PubMed not MEDLINE