학술논문
Neurodesk: an accessible, flexible and portable data analysis environment for reproducible neuroimaging
Document Type
Original Paper
Author
Renton, Angela I.; Dao, Thuy T.; Johnstone, Tom; Civier, Oren; Sullivan, Ryan P.; White, David J.; Lyons, Paris; Slade, Benjamin M.; Abbott, David F.; Amos, Toluwani J.; Bollmann, Saskia; Botting, Andy; Campbell, Megan E. J.; Chang, Jeryn; Close, Thomas G.; Dörig, Monika; Eckstein, Korbinian; Egan, Gary F.; Evas, Stefanie; Flandin, Guillaume; Garner, Kelly G.; Garrido, Marta I.; Ghosh, Satrajit S.; Grignard, Martin; Halchenko, Yaroslav O.; Hannan, Anthony J.; Heinsfeld, Anibal S.; Huber, Laurentius; Hughes, Matthew E.; Kaczmarzyk, Jakub R.; Kasper, Lars; Kuhlmann, Levin; Lou, Kexin; Mantilla-Ramos, Yorguin-Jose; Mattingley, Jason B.; Meier, Michael L.; Morris, Jo; Narayanan, Akshaiy; Pestilli, Franco; Puce, Aina; Ribeiro, Fernanda L.; Rogasch, Nigel C.; Rorden, Chris; Schira, Mark M.; Shaw, Thomas B.; Sowman, Paul F.; Spitz, Gershon; Stewart, Ashley W.; Ye, Xincheng; Zhu, Judy D.; Narayanan, Aswin; Bollmann, Steffen
Source
Nature Methods: Techniques for life scientists and chemists. 21(5):804-808
Subject
Language
English
ISSN
1548-7091
1548-7105
1548-7105
Abstract
Neuroimaging research requires purpose-built analysis software, which is challenging to install and may produce different results across computing environments. The community-oriented, open-source Neurodesk platform (https://www.neurodesk.org/) harnesses a comprehensive and growing suite of neuroimaging software containers. Neurodesk includes a browser-accessible virtual desktop, command-line interface and computational notebook compatibility, allowing for accessible, flexible, portable and fully reproducible neuroimaging analysis on personal workstations, high-performance computers and the cloud.
Neurodesk is a platform for analyzing human neuroimaging data, which provides numerous tools in a containerized form, thereby ensuring reproducibility and portability.
Neurodesk is a platform for analyzing human neuroimaging data, which provides numerous tools in a containerized form, thereby ensuring reproducibility and portability.