학술논문

Genomics of Parallel Experimental Evolution in Drosophila
Document Type
article
Source
Molecular Biology and Evolution. 34(4)
Subject
Biotechnology
Human Genome
Genetics
Generic health relevance
Adaptation
Physiological
Alleles
Animals
Biological Evolution
Databases
Nucleic Acid
Drosophila
Drosophila melanogaster
Evolution
Molecular
Gene Frequency
Genetic Fitness
Genetic Variation
Genomics
Linkage Disequilibrium
Models
Animal
Models
Genetic
Polymorphism
Single Nucleotide
Selection
Genetic
experimental evolution
population genomics
adaptation
Biochemistry and Cell Biology
Evolutionary Biology
Language
Abstract
What are the genomic foundations of adaptation in sexual populations? We address this question using fitness-character and whole-genome sequence data from 30 Drosophila laboratory populations. These 30 populations are part of a nearly 40-year laboratory radiation featuring 3 selection regimes, each shared by 10 populations for up to 837 generations, with moderately large effective population sizes. Each of 3 sets of the 10 populations that shared a selection regime consists of 5 populations that have long been maintained under that selection regime, paired with 5 populations that had only recently been subjected to that selection regime. We find a high degree of evolutionary parallelism in fitness phenotypes when most-recent selection regimes are shared, as in previous studies from our laboratory. We also find genomic parallelism with respect to the frequencies of single-nucleotide polymorphisms, transposable elements, insertions, and structural variants, which was expected. Entirely unexpected was a high degree of parallelism for linkage disequilibrium. The evolutionary genetic changes among these sexual populations are rapid and genomically extensive. This pattern may be due to segregating functional genetic variation that is abundantly maintained genome-wide by selection, variation that responds immediately to changes of selection regime.