학술논문

A Recurrent De Novo Variant in NACC1 Causes a Syndrome Characterized by Infantile Epilepsy, Cataracts, and Profound Developmental Delay
Document Type
article
Author
Schoch, KellyMeng, LinyanSzelinger, SzabolcsBearden, David RStray-Pedersen, AsbjorgBusk, Oyvind LStong, NicholasListon, EriskayCohn, Ronald DScaglia, FernandoRosenfeld, Jill ATarpinian, JenniferSkraban, Cara MDeardorff, Matthew AFriedman, Jeremy NAkdemir, Zeynep CobanWalley, NicoleMikati, Mohamad AKranz, Peter GJasien, JoanMcConkie-Rosell, AllynMcDonald, MarieWechsler, Stephanie BurnsFreemark, MichaelKansagra, SujayFreedman, SharonBali, DeekshaMillan, FranciscaBale, SherriNelson, Stanley FLee, HaneDorrani, NaghmehGoldstein, David BXiao, RuiYang, YapingPosey, Jennifer EMartinez-Agosto, Julian ALupski, James RWangler, Michael FShashi, VandanaGrody, Wayne WStrom, Samuel PVilain, EricDeignan, JoshuaQuintero-Rivera, FabiolaKantarci, SibelMullegama, SureniKang, Sung-HaeAlejandro, Mercedes EBacino, Carlos ABalasubramanyam, AshokBurrage, Lindsay CClark, Gary DCraigen, William JDhar, Shweta UEmrick, Lisa TGraham, Brett HHanchard, Neil AJain, MahimLalani, Seema RLee, Brendan HLewis, Richard AMashid, Azamian SMoretti, Paolo MNicholas, Sarah KOrange, Jordan SPotocki, LorraineScott, Daryl ATran, Alyssa ABellen, Hugo JYamamoto, ShinyaEng, Christine MMuzny, Donna MWard, Patricia AGropman, Andrea LJiang, Yong-huiPena, Loren DMSpillmann, Rebecca CSullivan, Jennifer AWalley, Nicole MBeggs, Alan HBriere, Lauren CCooper, Cynthia MDonnell-Fink, Laurel AKrieg, Elizabeth LKrier, Joel BLincoln, Sharyn A
Source
American Journal of Human Genetics. 100(2)
Subject
Biological Sciences
Bioinformatics and Computational Biology
Genetics
Neurosciences
Pediatric
Brain Disorders
Neurodegenerative
Epilepsy
Intellectual and Developmental Disabilities (IDD)
Human Genome
2.1 Biological and endogenous factors
Aetiology
Neurological
Alleles
Amino Acid Sequence
Brain
Cataract
Child
Child
Preschool
Female
Genetic Variation
Genome-Wide Association Study
Humans
Infant
Intellectual Disability
Magnetic Resonance Imaging
Male
Microcephaly
Mutation
Missense
Neoplasm Proteins
Pedigree
Phenotype
Repressor Proteins
Spasms
Infantile
UCLA Clinical Genomics Center
Undiagnosed Diseases Network
NACC1
cataracts
developmental/intellectual disabilities
epilepsy
irritability
microcephaly
stereotypy
whole-exome sequencing
Medical and Health Sciences
Genetics & Heredity
Biological sciences
Biomedical and clinical sciences
Health sciences
Language
Abstract
Whole-exome sequencing (WES) has increasingly enabled new pathogenic gene variant identification for undiagnosed neurodevelopmental disorders and provided insights into both gene function and disease biology. Here, we describe seven children with a neurodevelopmental disorder characterized by microcephaly, profound developmental delays and/or intellectual disability, cataracts, severe epilepsy including infantile spasms, irritability, failure to thrive, and stereotypic hand movements. Brain imaging in these individuals reveals delay in myelination and cerebral atrophy. We observe an identical recurrent de novo heterozygous c.892C>T (p.Arg298Trp) variant in the nucleus accumbens associated 1 (NACC1) gene in seven affected individuals. One of the seven individuals is mosaic for this variant. NACC1 encodes a transcriptional repressor implicated in gene expression and has not previously been associated with germline disorders. The probability of finding the same missense NACC1 variant by chance in 7 out of 17,228 individuals who underwent WES for diagnoses of neurodevelopmental phenotypes is extremely small and achieves genome-wide significance (p = 1.25 × 10-14). Selective constraint against missense variants in NACC1 makes this excess of an identical missense variant in all seven individuals more remarkable. Our findings are consistent with a germline recurrent mutational hotspot associated with an allele-specific neurodevelopmental phenotype in NACC1.