학술논문

Structural and thermodynamic analyses of human TMED1 (p24γ1) Golgi dynamics.
Document Type
Article
Source
Biochimie. Jan2022, Vol. 192, p72-82. 11p.
Subject
*MOLECULAR dynamics
*ENDOPLASMIC reticulum
*MEMBRANE lipids
*HOMODIMERS
*CRYSTAL structure
Language
ISSN
0300-9084
Abstract
The transmembrane emp24 domain-containing (TMED) proteins, also called p24 proteins, are members of a family of sorting receptors present in all representatives of the Eukarya and abundantly present in all subcompartments of the early secretory pathway, namely the endoplasmic reticulum (ER), the Golgi, and the intermediate compartment. Although essential during the bidirectional transport between the ER and the Golgi, there is still a lack of information regarding the TMED's structure across different subfamilies. Besides, although the presence of a TMED homo-oligomerization was suggested previously based on crystallographic contacts observed for the isolated Golgi Dynamics (GOLD) domain, no further analyses of its presence in solution were done. Here, we describe the first high-resolution structure of a TMED1 GOLD representative and its biophysical characterization in solution. The crystal structure showed a dimer formation that is also present in solution in a salt-dependent manner, suggesting that the GOLD domain can form homodimers in solution even in the absence of the TMED1 coiled-coil region. A molecular dynamics description of the dimer stabilization, with a phylogenetic analysis of the residues important for the oligomerization and a model for the orientation towards the lipid membrane, are also presented. - The structure and solution characterization of a TMED1 GOLD were firstly presented - The GOLD domain can form homodimers in solution in a salt-dependent fashion - Molecular Dynamics unravelled the net of interactions inside the dimer interface - Residues important for the oligomerization are conserved inside the γ-subfamily - A model for the γ-subfamily GOLD orientation towards the membrane surface is proposed [ABSTRACT FROM AUTHOR]