학술논문

Biased retrieval of chemical series in receptor-based virtual screening.
Document Type
Article
Source
Journal of Computer-Aided Molecular Design. Dec2010, Vol. 24 Issue 12, p1053-1062. 10p.
Subject
*PROTEIN kinases
*PHOSPHOTRANSFERASES
*IMMUNOSPECIFICITY
*BINDING sites
*IMMUNOGLOBULIN idiotypes
*CRYSTALLOGRAPHY
*VIRTUAL reality in medicine
Language
ISSN
0920-654X
Abstract
Using the kinases in the DUD dataset and an in-house HTS dataset from PI3K-γ, receptor-based virtual screening experiments were performed using Glide SP docking. While significant enrichments were observed for eight of the nine targets in the set, more detailed analyses highlighted that much of the early enrichment (10-80%) is the result of retrieval of a single cluster of active compounds. This biased retrieval was not necessarily due to early enrichment of the cluster containing the co-crystallized ligand. Virtual screening validation studies could thus benefit from including cluster-based analyses to assess enrichment of diverse chemotypes. [ABSTRACT FROM AUTHOR]